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gwa1_scaffold_31_prodigal-single.1__X__X__00196
Bact-Virgwa1_scaffold_31_prodigal-single.1__X__X__00196
Identity
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-46
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j91A03 | 6.10.250.1570 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 59.0 | 6.09e-01 | 100.0% | 100.0% |
| 4c23B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.72 | 58.0 | 3.65e-01 | 100.0% | 17.1% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.63 | 53.0 | 4.44e-01 | 97.7% | 88.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3616363 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.75 | 62.0 | 3.97e-01 | 100.0% | 18.7% |
| 3545706 | 541.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit | 0.66 | 55.0 | 5.31e-01 | 97.7% | 88.0% |
D2
high
residues 54-131
Domain cluster:
rep: amazon_plume_scaffold_4_prodigal-single.1__X__X__00098__D6-72
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 50.0 | 5.42e-01 | 100.0% | 72.3% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 52.0 | 6.34e-01 | 100.0% | 100.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 55.0 | 5.61e-01 | 100.0% | 71.1% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 48.0 | 5.41e-01 | 98.7% | 79.7% |
| 6ghmC02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 53.0 | 5.81e-01 | 100.0% | 89.1% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 58.0 | 5.34e-01 | 100.0% | 65.7% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 46.0 | 5.10e-01 | 100.0% | 81.7% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 52.0 | 5.45e-01 | 100.0% | 80.6% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 5.69e-01 | 100.0% | 93.0% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 47.0 | 3.79e-01 | 100.0% | 39.1% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 47.0 | 4.82e-01 | 100.0% | 80.8% |
| 1m9sA04 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 52.0 | 5.09e-01 | 100.0% | 82.6% |
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.61 | 47.0 | 4.63e-01 | 100.0% | 77.1% |
| 2k5iA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 46.0 | 4.51e-01 | 100.0% | 76.2% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.60 | 53.0 | 4.31e-01 | 100.0% | 52.4% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 42.0 | 4.29e-01 | 100.0% | 77.3% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 42.0 | 4.35e-01 | 100.0% | 78.7% |
| 3mh9A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.59 | 50.0 | 3.73e-01 | 96.2% | 81.0% |
| 6e55A01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.59 | 45.0 | 4.64e-01 | 100.0% | 89.2% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 40.0 | 3.96e-01 | 70.5% | 92.6% |
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 35.0 | 3.62e-01 | 92.3% | 63.5% |
| 1xkgA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 50.0 | 3.37e-01 | 100.0% | 26.8% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 4.05e-01 | 96.2% | 88.3% |
| 1sp4B00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 49.0 | 3.62e-01 | 100.0% | 37.6% |
| 1kzlA02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 37.0 | 3.41e-01 | 70.5% | 79.2% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 37.0 | 3.94e-01 | 88.5% | 80.9% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 36.0 | 3.77e-01 | 88.5% | 76.1% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 45.0 | 3.00e-01 | 96.2% | 77.3% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 39.0 | 3.66e-01 | 94.9% | 62.9% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 44.0 | 3.23e-01 | 97.4% | 70.4% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 44.0 | 3.25e-01 | 97.4% | 69.8% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 36.0 | 3.80e-01 | 88.5% | 81.2% |
| 1deuB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 45.0 | 3.17e-01 | 100.0% | 31.8% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 36.0 | 3.05e-01 | 74.4% | 71.5% |
| 2uvaG08 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 41.0 | 2.82e-01 | 89.7% | 82.3% |
| 1k4nA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 41.0 | 3.16e-01 | 89.7% | 53.0% |
| 4rljA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 43.0 | 3.50e-01 | 93.6% | 93.8% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3622139 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.80 | 49.0 | 4.64e-01 | 100.0% | 53.3% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.79 | 52.0 | 5.70e-01 | 100.0% | 81.5% |
| 3713334 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.78 | 53.0 | 5.95e-01 | 100.0% | 90.0% |
| 3477037 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.77 | 57.0 | 6.06e-01 | 100.0% | 87.1% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 53.0 | 4.16e-01 | 98.7% | 38.0% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.75 | 55.0 | 5.86e-01 | 100.0% | 85.7% |
| 3932647 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 52.0 | 5.07e-01 | 100.0% | 65.9% |
| 165654 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.75 | 53.0 | 5.49e-01 | 100.0% | 78.4% |
| 3503332 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 58.0 | 6.27e-01 | 98.7% | 98.5% |
| 3785900 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 58.0 | 3.57e-01 | 100.0% | 15.1% |
| 1117666 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.74 | 59.0 | 5.69e-01 | 100.0% | 76.5% |
| 3733191 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 58.0 | 3.62e-01 | 100.0% | 17.1% |
| 3867207 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.73 | 53.0 | 4.95e-01 | 100.0% | 62.1% |
| 4021079 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.72 | 57.0 | 4.17e-01 | 100.0% | 33.3% |
| 3848399 | 4.8.1.24 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th | 0.71 | 50.0 | 5.27e-01 | 100.0% | 81.4% |
| 3213653 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.70 | 61.0 | 6.09e-01 | 100.0% | 92.5% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 42.0 | 4.86e-01 | 100.0% | 89.1% |
| 4055974 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.68 | 51.0 | 4.40e-01 | 100.0% | 50.4% |
| 3829476 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.67 | 53.0 | 4.05e-01 | 100.0% | 37.7% |
| 4031510 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 47.0 | 4.50e-01 | 100.0% | 64.4% |
| 3501337 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.65 | 52.0 | 5.21e-01 | 100.0% | 82.5% |
| 3483566 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 5.02e-01 | 100.0% | 68.6% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.65 | 47.0 | 4.44e-01 | 100.0% | 63.2% |
| 3423859 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 56.0 | 5.37e-01 | 100.0% | 83.3% |
| 4523548 | 4.8.1.35 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 | 0.63 | 49.0 | 4.82e-01 | 97.4% | 75.3% |
| 3482360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 5.00e-01 | 100.0% | 77.8% |
| 4002655 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 56.0 | 4.58e-01 | 100.0% | 58.6% |
| 3278698 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 56.0 | 5.06e-01 | 100.0% | 81.9% |
| 3385654 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 55.0 | 4.66e-01 | 98.7% | 64.2% |
| 3302676 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.59 | 52.0 | 5.17e-01 | 98.7% | 93.8% |
| 3299937 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 53.0 | 5.03e-01 | 100.0% | 85.6% |
| 3257844 | 71.1.1.16 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa | 0.58 | 50.0 | 3.76e-01 | 97.4% | 74.5% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.58 | 49.0 | 4.48e-01 | 100.0% | 71.0% |
| 3246514 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.57 | 52.0 | 3.68e-01 | 100.0% | 43.5% |
| 3240676 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.57 | 52.0 | 3.67e-01 | 100.0% | 42.2% |
| 3706854 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.57 | 51.0 | 3.35e-01 | 100.0% | 28.2% |
| 3853638 | 4.8.1.9 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_2 | 0.56 | 42.0 | 4.21e-01 | 93.6% | 77.5% |
| 4030387 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.55 | 50.0 | 3.22e-01 | 100.0% | 30.4% |
| 3236706 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.55 | 49.0 | 3.38e-01 | 100.0% | 38.8% |
| 4040354 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 38.0 | 3.94e-01 | 89.7% | 76.0% |
| 3713577 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.54 | 48.0 | 3.12e-01 | 100.0% | 28.4% |
| 4030011 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.54 | 44.0 | 4.26e-01 | 100.0% | 80.0% |
| 3525883 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.53 | 41.0 | 2.64e-01 | 85.9% | 79.8% |
| 3585032 | 9.1.1.50 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 | 0.53 | 45.0 | 3.87e-01 | 98.7% | 94.6% |
| 5019857 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.52 | 43.0 | 3.31e-01 | 94.9% | 76.5% |
| 4488657 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 40.0 | 3.37e-01 | 82.1% | 83.1% |
| 3474996 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.52 | 41.0 | 2.66e-01 | 87.2% | 81.2% |
| 3400166 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.52 | 40.0 | 2.56e-01 | 84.6% | 81.7% |
| 3511505 | 9.23.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 | 0.51 | 46.0 | 3.97e-01 | 98.7% | 76.7% |
| 3928424 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.51 | 41.0 | 2.70e-01 | 91.0% | 37.6% |