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gwa1_scaffold_31_prodigal-single.1__X__X__00253
Bact-Virgwa1_scaffold_31_prodigal-single.1__X__X__00253
Identity
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-83
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 53.0 | 5.95e-01 | 98.8% | 100.0% |
| 2c2iA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.65 | 54.0 | 4.40e-01 | 89.0% | 100.0% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.65 | 55.0 | 4.56e-01 | 92.7% | 54.1% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.65 | 57.0 | 4.13e-01 | 97.6% | 35.9% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.65 | 56.0 | 4.59e-01 | 93.9% | 57.9% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 55.0 | 4.38e-01 | 95.1% | 74.8% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.62 | 44.0 | 4.83e-01 | 90.2% | 95.2% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 45.0 | 4.22e-01 | 76.8% | 93.2% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 54.0 | 4.45e-01 | 97.6% | 56.3% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 55.0 | 4.47e-01 | 97.6% | 58.7% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 49.0 | 4.20e-01 | 86.6% | 84.6% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 53.0 | 4.42e-01 | 97.6% | 68.5% |
| 4jrnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 52.0 | 4.36e-01 | 93.9% | 75.2% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 50.0 | 4.26e-01 | 90.2% | 82.8% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 54.0 | 4.19e-01 | 96.3% | 74.1% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 50.0 | 4.62e-01 | 91.5% | 81.9% |
| 1q6wG00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 50.0 | 4.07e-01 | 89.0% | 98.0% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 50.0 | 4.52e-01 | 93.9% | 80.2% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.60 | 50.0 | 4.17e-01 | 89.0% | 93.3% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 52.0 | 4.10e-01 | 96.3% | 75.3% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 51.0 | 4.08e-01 | 100.0% | 52.6% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 49.0 | 4.11e-01 | 95.1% | 88.7% |
| 1y0gA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.57 | 46.0 | 3.72e-01 | 91.5% | 97.0% |
| 1xweA01 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 51.0 | 4.23e-01 | 100.0% | 79.0% |
| 1wubA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.56 | 50.0 | 3.88e-01 | 98.8% | 94.3% |
| 4b0bB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 46.0 | 3.64e-01 | 90.2% | 95.3% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 46.0 | 3.93e-01 | 95.1% | 75.9% |
| 5w17A01 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.55 | 49.0 | 3.98e-01 | 97.6% | 88.7% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.55 | 44.0 | 3.78e-01 | 90.2% | 60.4% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 46.0 | 3.76e-01 | 96.3% | 71.4% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 48.0 | 3.72e-01 | 98.8% | 80.2% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 46.0 | 3.13e-01 | 93.9% | 43.7% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 45.0 | 3.09e-01 | 95.1% | 42.9% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 36.0 | 3.65e-01 | 90.2% | 72.6% |
| 2kdyA01 | 2.60.40.1980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.41e-01 | 89.0% | 54.5% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4674170 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.73 | 60.0 | 5.25e-01 | 97.6% | 60.0% |
| 3302166 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.73 | 54.0 | 5.97e-01 | 97.6% | 98.5% |
| 4023201 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.70 | 60.0 | 4.04e-01 | 93.9% | 52.1% |
| 3540253 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.70 | 58.0 | 5.56e-01 | 100.0% | 77.9% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 6.11e-01 | 100.0% | 98.8% |
| 3907176 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.69 | 62.0 | 6.05e-01 | 100.0% | 96.7% |
| 3505947 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.68 | 62.0 | 5.43e-01 | 98.8% | 85.0% |
| 4020922 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.67 | 60.0 | 4.08e-01 | 98.8% | 47.6% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 58.0 | 5.79e-01 | 100.0% | 94.1% |
| 3700518 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.65 | 58.0 | 5.00e-01 | 100.0% | 74.6% |
| 3597361 | 4.23.1.0 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like | 0.65 | 58.0 | 4.99e-01 | 100.0% | 74.6% |
| 3937006 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 53.0 | 5.44e-01 | 90.2% | 97.4% |
| 3631731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 58.0 | 4.77e-01 | 100.0% | 65.3% |
| 2410381 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 52.0 | 5.34e-01 | 95.1% | 89.9% |
| 3836457 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.64 | 56.0 | 4.62e-01 | 97.6% | 56.0% |
| 3208838 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.64 | 56.0 | 4.61e-01 | 100.0% | 64.5% |
| 3575867 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.63 | 56.0 | 4.68e-01 | 97.6% | 61.6% |
| 3853596 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.63 | 56.0 | 4.81e-01 | 100.0% | 80.0% |
| 3992087 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.63 | 55.0 | 4.35e-01 | 97.6% | 50.6% |
| 4371290 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.62 | 54.0 | 4.72e-01 | 95.1% | 98.4% |
| 3675120 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.62 | 50.0 | 5.02e-01 | 93.9% | 84.7% |
| 3174446 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.62 | 53.0 | 3.43e-01 | 92.7% | 30.1% |
| None | — | 0.62 | 55.0 | 3.78e-01 | 100.0% | 40.0% | |
| 861 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.61 | 53.0 | 4.55e-01 | 95.1% | 96.9% |
| 5005880 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.60 | 50.0 | 4.00e-01 | 89.0% | 94.8% |
| 2832038 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.60 | 52.0 | 4.66e-01 | 97.6% | 80.0% |
| 3587639 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.60 | 51.0 | 4.71e-01 | 96.3% | 83.3% |
| 3612182 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 50.0 | 4.90e-01 | 91.5% | 100.0% |
| 3614465 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 50.0 | 3.93e-01 | 93.9% | 44.1% |
| 3955562 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.60 | 50.0 | 4.65e-01 | 92.7% | 80.0% |
| 4667326 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.60 | 50.0 | 4.47e-01 | 92.7% | 80.9% |
| 3224530 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 50.0 | 3.83e-01 | 96.3% | 64.0% |
| 3423894 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.58 | 48.0 | 3.69e-01 | 91.5% | 95.9% |
| 3281482 | 222.1.1.34 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AvrD | 0.58 | 49.0 | 4.10e-01 | 90.2% | 91.9% |
| 3596331 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.58 | 46.0 | 4.04e-01 | 87.8% | 84.4% |
| 3967804 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 48.0 | 4.43e-01 | 90.2% | 82.9% |
| 5062749 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.57 | 49.0 | 4.37e-01 | 93.9% | 79.8% |
| 4080326 | 243.1.1.76 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 | 0.56 | 48.0 | 4.26e-01 | 95.1% | 93.3% |
| 3198974 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.56 | 45.0 | 3.42e-01 | 90.2% | 90.0% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.56 | 50.0 | 4.80e-01 | 100.0% | 98.9% |
| 3234110 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 48.0 | 3.59e-01 | 93.9% | 55.9% |
| 4198183 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 40.0 | 2.42e-01 | 76.8% | 15.3% |
| 3416305 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 48.0 | 3.09e-01 | 93.9% | 33.2% |
| 3626637 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 48.0 | 3.17e-01 | 95.1% | 40.9% |
| 2141638 | 9.5.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI | 0.55 | 49.0 | 3.83e-01 | 97.6% | 78.2% |
| 3545090 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 46.0 | 3.34e-01 | 91.5% | 82.3% |
| 3458481 | 9.3.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N | 0.54 | 48.0 | 3.59e-01 | 97.6% | 80.3% |
| 3177508 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.54 | 41.0 | 2.72e-01 | 81.7% | 25.9% |
| 3426699 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 49.0 | 4.31e-01 | 100.0% | 91.7% |
| 3227147 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 47.0 | 3.14e-01 | 95.1% | 40.0% |
| 3276425 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.54 | 46.0 | 3.13e-01 | 92.7% | 85.1% |
| 5045101 | 4121.1.1.19 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF27230 | 0.54 | 46.0 | 3.05e-01 | 95.1% | 35.7% |
| 3483990 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.54 | 46.0 | 3.15e-01 | 95.1% | 42.3% |
| 3244242 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 46.0 | 3.06e-01 | 95.1% | 32.6% |
| 4011818 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 45.0 | 2.98e-01 | 95.1% | 30.9% |
| 3462119 | 9.1.1.23 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N | 0.51 | 41.0 | 3.27e-01 | 90.2% | 93.5% |
| 3959029 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 41.0 | 3.43e-01 | 87.8% | 93.8% |
| 3984883 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.51 | 36.0 | 3.26e-01 | 89.0% | 53.0% |