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gwa1_scaffold_31_prodigal-single.1__X__X__00271
Bact-Virgwa1_scaffold_31_prodigal-single.1__X__X__00271
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 60.0 | 5.80e-01 | 100.0% | 80.3% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 57.0 | 5.42e-01 | 100.0% | 77.3% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 54.0 | 5.40e-01 | 100.0% | 85.3% |
| 3pggA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 58.0 | 5.45e-01 | 100.0% | 79.5% |
| 4fgoA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.64 | 50.0 | 3.64e-01 | 100.0% | 30.4% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.63 | 51.0 | 3.63e-01 | 100.0% | 29.1% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.62 | 46.0 | 3.63e-01 | 100.0% | 37.7% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 47.0 | 4.49e-01 | 100.0% | 70.1% |
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.92e-01 | 100.0% | 84.2% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 50.0 | 3.80e-01 | 100.0% | 69.9% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 49.0 | 3.75e-01 | 100.0% | 87.0% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.57 | 48.0 | 4.33e-01 | 96.9% | 83.9% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.56 | 47.0 | 3.40e-01 | 100.0% | 95.3% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 39.0 | 3.42e-01 | 100.0% | 47.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.07e-01 | 100.0% | 73.7% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 47.0 | 3.57e-01 | 100.0% | 88.2% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 48.0 | 4.28e-01 | 100.0% | 71.1% |
| 4h3uA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 3.70e-01 | 96.9% | 80.0% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 45.0 | 3.39e-01 | 100.0% | 41.6% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.54 | 38.0 | 3.02e-01 | 100.0% | 33.3% |
| 1ia9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 45.0 | 3.61e-01 | 100.0% | 92.4% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 47.0 | 2.97e-01 | 100.0% | 99.1% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.54 | 40.0 | 3.43e-01 | 100.0% | 49.5% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.54 | 46.0 | 4.11e-01 | 100.0% | 81.1% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 4.31e-01 | 100.0% | 84.7% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 40.0 | 3.51e-01 | 100.0% | 52.0% |
| 2kcjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 3.94e-01 | 100.0% | 76.9% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.53 | 44.0 | 3.77e-01 | 93.8% | 94.4% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.61e-01 | 100.0% | 77.1% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 42.0 | 2.68e-01 | 87.5% | 22.1% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 40.0 | 2.94e-01 | 92.2% | 50.0% |
| 2qcsB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 34.0 | 2.80e-01 | 100.0% | 35.2% |
| 5e1vB00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.51 | 38.0 | 2.59e-01 | 84.4% | 37.6% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 43.0 | 4.23e-01 | 100.0% | 88.9% |
| 4b0bB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 2.90e-01 | 84.4% | 65.7% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 40.0 | 3.62e-01 | 100.0% | 63.0% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 3.30e-01 | 92.2% | 91.4% |
| 3omlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 40.0 | 2.74e-01 | 90.6% | 62.5% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 39.0 | 2.79e-01 | 100.0% | 27.1% |
| 1xf1A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.50 | 41.0 | 3.30e-01 | 98.4% | 83.8% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 60.0 | 5.10e-01 | 100.0% | 55.8% |
| 4642909 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.72 | 55.0 | 4.44e-01 | 93.8% | 43.3% |
| 4937692 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 60.0 | 6.06e-01 | 100.0% | 92.3% |
| 3386589 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.71 | 53.0 | 4.22e-01 | 92.2% | 40.8% |
| 5033892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 52.0 | 5.22e-01 | 100.0% | 81.5% |
| 4005412 | 3523.1.1.3 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptC | 0.67 | 56.0 | 4.26e-01 | 92.2% | 40.7% |
| 3176686 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.67 | 60.0 | 5.44e-01 | 100.0% | 82.4% |
| 5044296 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 59.0 | 5.57e-01 | 100.0% | 82.1% |
| 3626383 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.66 | 59.0 | 5.18e-01 | 100.0% | 71.6% |
| 4030011 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.66 | 57.0 | 5.18e-01 | 100.0% | 74.4% |
| 3281271 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.65 | 50.0 | 4.52e-01 | 100.0% | 60.0% |
| 3199555 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.65 | 56.0 | 4.50e-01 | 100.0% | 49.6% |
| 5038431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 50.0 | 4.92e-01 | 100.0% | 78.6% |
| 3289944 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.64 | 50.0 | 4.48e-01 | 100.0% | 60.0% |
| 4976962 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 54.0 | 4.81e-01 | 100.0% | 75.0% |
| 3942912 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.64 | 51.0 | 4.66e-01 | 100.0% | 65.9% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.63 | 50.0 | 4.45e-01 | 100.0% | 58.9% |
| 3972550 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.63 | 50.0 | 4.36e-01 | 100.0% | 56.0% |
| 3959770 | 4.31.1.0 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 | 0.63 | 51.0 | 4.58e-01 | 100.0% | 63.3% |
| 4545520 | 4.7.1.7 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL | 0.63 | 50.0 | 4.64e-01 | 100.0% | 67.1% |
| 3953109 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.63 | 51.0 | 4.50e-01 | 100.0% | 60.0% |
| 4272564 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.62 | 53.0 | 4.54e-01 | 100.0% | 57.4% |
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 49.0 | 4.46e-01 | 100.0% | 62.2% |
| 3706101 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 3.77e-01 | 100.0% | 35.7% |
| 3587259 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.62 | 49.0 | 4.44e-01 | 100.0% | 63.3% |
| 3387532 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.61 | 51.0 | 4.45e-01 | 93.8% | 63.0% |
| 3283097 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.61 | 49.0 | 4.18e-01 | 100.0% | 52.7% |
| 3280641 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.61 | 48.0 | 4.21e-01 | 100.0% | 57.0% |
| 4081800 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.60 | 47.0 | 3.24e-01 | 84.4% | 35.2% |
| 3966547 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.59 | 50.0 | 4.32e-01 | 95.3% | 60.0% |
| 4945089 | 3487.1.1.0 ↗ | a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 | 0.59 | 51.0 | 4.22e-01 | 93.8% | 86.4% |
| 3839134 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.59 | 48.0 | 4.18e-01 | 90.6% | 61.0% |
| 3713334 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 44.0 | 4.57e-01 | 100.0% | 90.0% |
| 165654 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.56 | 42.0 | 4.13e-01 | 100.0% | 74.3% |
| 4622062 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 3.26e-01 | 100.0% | 26.4% |
| 4994895 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.56 | 48.0 | 4.46e-01 | 100.0% | 77.5% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.31e-01 | 100.0% | 93.1% |
| 150293 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.55 | 48.0 | 4.27e-01 | 100.0% | 66.7% |
| 5043905 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.54 | 35.0 | 2.51e-01 | 100.0% | 19.1% |
| 3714156 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 40.0 | 3.70e-01 | 100.0% | 61.2% |
| 4581369 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.54 | 44.0 | 3.86e-01 | 100.0% | 59.0% |
| 3389726 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.54 | 43.0 | 3.06e-01 | 89.1% | 58.0% |
| 3712451 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 3.27e-01 | 100.0% | 41.6% |
| 3246086 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 3.60e-01 | 100.0% | 56.8% |
| 3213725 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.53 | 40.0 | 2.67e-01 | 100.0% | 19.3% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.53 | 42.0 | 4.19e-01 | 100.0% | 87.1% |
| 1308671 | 222.1.1.20 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N | 0.51 | 39.0 | 3.12e-01 | 82.8% | 91.6% |
| None | — | 0.51 | 44.0 | 2.97e-01 | 100.0% | 98.9% | |
| 3450544 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.50 | 37.0 | 3.41e-01 | 100.0% | 60.0% |
| 3188712 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.50 | 43.0 | 3.77e-01 | 100.0% | 72.0% |