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gwd2_scaffold_22_prodigal-single.1__X__X__00021

Bact-Vir

gwd2_scaffold_22_prodigal-single.1__X__X__00021

Identity

Kingdom:
phage

Quality

72.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-90
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 45.0 4.35e-01 100.0% 49.3%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 55.0 5.69e-01 82.4% 75.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 64.0 6.53e-01 100.0% 88.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 51.0 6.07e-01 77.9% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 44.0 4.62e-01 100.0% 61.3%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 51.0 5.52e-01 86.8% 79.3%
2bh8B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 54.0 5.93e-01 79.4% 96.4%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 43.0 4.80e-01 100.0% 75.5%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 63.0 5.55e-01 100.0% 65.7%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 46.0 5.46e-01 77.9% 100.0%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 63.0 5.69e-01 97.1% 98.9%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 60.0 5.73e-01 98.5% 81.0%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 55.0 5.82e-01 98.5% 96.7%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.70 55.0 5.55e-01 88.2% 85.1%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 55.0 5.70e-01 100.0% 93.8%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 61.0 5.72e-01 100.0% 95.2%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 59.0 5.05e-01 100.0% 70.6%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 58.0 4.96e-01 100.0% 75.9%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 57.0 4.41e-01 100.0% 55.5%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 56.0 4.54e-01 100.0% 59.3%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 56.0 4.89e-01 100.0% 75.5%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 56.0 5.33e-01 100.0% 84.1%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 55.0 4.38e-01 100.0% 55.3%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 54.0 4.58e-01 100.0% 59.3%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 56.0 5.06e-01 100.0% 78.0%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 52.0 4.37e-01 100.0% 64.8%
2xr1A03 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 44.0 3.00e-01 76.5% 99.2%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 42.0 4.40e-01 86.8% 84.5%
2az4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 44.0 2.98e-01 76.5% 99.3%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 4.54e-01 100.0% 74.3%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 49.0 4.18e-01 100.0% 53.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 4.16e-01 83.8% 78.7%
3csqA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.59 47.0 3.60e-01 88.2% 61.0%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 4.28e-01 100.0% 75.7%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 44.0 3.58e-01 88.2% 47.6%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 37.0 2.87e-01 72.1% 45.8%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 40.0 3.03e-01 79.4% 56.4%
3x2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 37.0 2.65e-01 75.0% 100.0%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 4.44e-01 100.0% 88.6%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 45.0 3.66e-01 100.0% 84.9%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 41.0 3.48e-01 100.0% 52.2%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.51 31.0 3.35e-01 100.0% 76.9%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.51 38.0 3.35e-01 100.0% 53.4%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 4.09e-01 100.0% 92.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957569 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.86 81.0 7.10e-01 100.0% 76.8%
5058911 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.85 79.0 6.60e-01 100.0% 71.8%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 45.0 2.70e-01 98.5% 8.7%
4172308 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.77 56.0 4.47e-01 86.8% 40.0%
2468517 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.77 71.0 5.13e-01 100.0% 42.1%
160497 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.77 56.0 5.57e-01 86.8% 73.2%
4478612 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.77 56.0 4.56e-01 86.8% 43.3%
3386124 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.77 50.0 4.76e-01 82.4% 57.5%
3164388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.77 55.0 5.64e-01 86.8% 78.5%
4047622 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.77 55.0 4.61e-01 86.8% 46.4%
424 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.76 57.0 5.61e-01 89.7% 74.6%
4990974 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.75 53.0 4.95e-01 88.2% 60.0%
4190130 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.74 55.0 4.99e-01 89.7% 58.9%
3970047 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 66.0 6.54e-01 100.0% 94.3%
4620412 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.74 53.0 4.41e-01 89.7% 44.3%
3944153 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.74 53.0 4.45e-01 88.2% 46.4%
None 0.73 65.0 6.06e-01 100.0% 78.8%
5017478 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.73 54.0 4.98e-01 91.2% 62.4%
5010824 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.73 55.0 4.56e-01 89.7% 47.8%
4382135 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.72 53.0 4.47e-01 88.2% 48.2%
1567587 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.72 53.0 5.29e-01 89.7% 76.1%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 42.0 4.16e-01 100.0% 54.1%
4961575 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 53.0 4.27e-01 88.2% 42.4%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 41.0 4.06e-01 100.0% 54.1%
4202799 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.70 52.0 4.28e-01 89.7% 43.2%
3386077 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 45.0 5.34e-01 73.5% 100.0%
3387994 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 54.0 5.16e-01 89.7% 71.2%
4018598 2.1.1.219 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.70 62.0 5.88e-01 98.5% 85.0%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.69 55.0 5.45e-01 89.7% 82.9%
5026951 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 63.0 5.06e-01 100.0% 89.6%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 41.0 3.71e-01 100.0% 44.4%
3514150 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.70e-01 100.0% 82.4%
4032927 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.14e-01 100.0% 61.7%
3840089 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 62.0 5.78e-01 100.0% 83.5%
5077089 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 45.0 4.50e-01 100.0% 65.7%
4453243 2.1.1.219 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.68 60.0 5.62e-01 100.0% 80.0%
5037694 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.68 61.0 5.36e-01 100.0% 78.0%
3212056 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 61.0 5.80e-01 100.0% 85.0%
3879653 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.67 42.0 4.19e-01 100.0% 61.4%
145722 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 59.0 5.05e-01 100.0% 70.6%
5003654 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 58.0 5.61e-01 97.1% 90.7%
3647740 2.1.1.69 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.65 57.0 4.46e-01 100.0% 49.3%
4945664 2.1.1.357 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA-synt_2 0.65 58.0 5.13e-01 100.0% 76.0%
4970158 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 57.0 4.75e-01 100.0% 57.5%
4060909 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 57.0 4.52e-01 100.0% 89.9%
5081144 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 57.0 5.27e-01 100.0% 81.2%
5028042 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 56.0 4.64e-01 100.0% 59.2%
4304764 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 58.0 4.71e-01 100.0% 88.2%
3905944 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.62 54.0 4.21e-01 100.0% 47.1%
5025491 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 49.0 4.03e-01 88.2% 47.2%
None 0.62 54.0 4.07e-01 100.0% 55.4%
4979493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 54.0 4.55e-01 100.0% 59.2%
5043255 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 52.0 5.00e-01 100.0% 81.2%
4668205 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 54.0 4.07e-01 100.0% 55.4%
3704298 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.61 44.0 3.66e-01 75.0% 93.0%
3928054 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 38.0 2.54e-01 91.2% 16.2%
4928221 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 53.0 4.43e-01 100.0% 54.8%
4948758 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 52.0 5.19e-01 98.5% 98.6%
5020056 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 54.0 4.47e-01 100.0% 99.2%
3969441 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 52.0 4.14e-01 100.0% 81.4%
3591064 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 43.0 4.42e-01 100.0% 83.1%
4963741 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 50.0 4.17e-01 100.0% 88.8%
4045126 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.58 49.0 4.09e-01 100.0% 92.3%
4114247 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.58 48.0 4.84e-01 97.1% 97.1%
1513775 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 43.0 4.25e-01 86.8% 77.8%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.57 50.0 4.92e-01 100.0% 94.7%
4994673 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.57 48.0 3.98e-01 100.0% 90.4%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.57 40.0 3.36e-01 75.0% 48.8%
4197641 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 49.0 4.19e-01 98.5% 96.4%
4051997 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.56 47.0 4.03e-01 100.0% 90.0%
4550958 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 42.0 3.65e-01 86.8% 78.8%
4073673 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.54 43.0 3.71e-01 89.7% 71.9%
4941490 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 39.0 3.06e-01 100.0% 37.8%
3193758 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.53 36.0 2.92e-01 75.0% 34.5%
4033846 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.52 36.0 2.97e-01 73.5% 49.6%
3802258 226.1.1.20 a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 0.52 43.0 3.40e-01 100.0% 85.9%
5006353 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 43.0 3.78e-01 100.0% 98.1%