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gwd2_scaffold_22_prodigal-single.1__X__X__00025
Bact-Virgwd2_scaffold_22_prodigal-single.1__X__X__00025
Identity
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1246-1364
Domain cluster:
rep: IMGVR_UViG_3300025458_000424-3300025458-Ga0209559_100090112__D25-130
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qmgA02 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.80 | 72.0 | 6.68e-01 | 99.2% | 78.5% |
| 1a2tA00 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.79 | 73.0 | 7.01e-01 | 99.2% | 88.1% |
| 3bdlA03 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.78 | 68.0 | 6.72e-01 | 99.2% | 88.0% |
| 4b9wA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.78 | 62.0 | 6.49e-01 | 88.2% | 90.7% |
| 3bdlA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.78 | 72.0 | 6.35e-01 | 98.3% | 83.1% |
| 3bdlA02 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.76 | 71.0 | 6.45e-01 | 99.2% | 78.6% |
| 5ygbA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 63.0 | 6.03e-01 | 87.4% | 100.0% |
| 5j39A01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 64.0 | 6.29e-01 | 89.9% | 96.0% |
| 4da2A01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 45.0 | 5.45e-01 | 76.5% | 91.1% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 69.0 | 6.20e-01 | 99.2% | 78.0% |
| 1luzA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 45.0 | 5.17e-01 | 73.1% | 85.9% |
| 3zjyC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 39.0 | 4.81e-01 | 73.1% | 83.8% |
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 36.0 | 4.97e-01 | 73.1% | 95.1% |
| 5lm7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 41.0 | 4.99e-01 | 98.3% | 87.2% |
| 2wfwA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 35.0 | 4.83e-01 | 72.3% | 96.6% |
| 3ntkB01 | 2.40.50.790 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 50.0 | 5.74e-01 | 84.0% | 100.0% |
| 1d7qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 39.0 | 3.64e-01 | 73.1% | 45.5% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 44.0 | 5.27e-01 | 76.5% | 95.0% |
| 3go5A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 40.0 | 5.03e-01 | 100.0% | 97.1% |
| 4rg1A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 37.0 | 4.78e-01 | 73.9% | 95.4% |
| 2awnC02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.68 | 42.0 | 5.06e-01 | 89.9% | 94.9% |
| 1nnxA00 | 2.40.50.200 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold | 0.67 | 39.0 | 4.38e-01 | 73.1% | 73.1% |
| 2je6I02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 44.0 | 4.96e-01 | 76.5% | 88.6% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.67 | 35.0 | 4.19e-01 | 89.9% | 75.0% |
| 1jjgA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 39.0 | 4.24e-01 | 75.6% | 68.6% |
| 2k52A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 39.0 | 4.75e-01 | 75.6% | 93.2% |
| 2ba0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 41.0 | 4.76e-01 | 73.1% | 87.4% |
| 2ahoB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 38.0 | 4.56e-01 | 96.6% | 86.3% |
| 2ja9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 41.0 | 4.81e-01 | 99.2% | 91.6% |
| 3psiA06 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 41.0 | 4.43e-01 | 100.0% | 76.0% |
| 1wfqA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 39.0 | 4.89e-01 | 78.2% | 100.0% |
| 1uwvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 39.0 | 4.78e-01 | 85.7% | 100.0% |
| 1ty0A02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 38.0 | 4.64e-01 | 73.1% | 97.3% |
| 3bzcA05 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 40.0 | 4.37e-01 | 95.0% | 80.2% |
| 1wi5A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 38.0 | 4.60e-01 | 71.4% | 96.0% |
| 1enfA01 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 39.0 | 4.63e-01 | 73.9% | 98.7% |
| 3o2zF00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 38.0 | 4.64e-01 | 72.3% | 97.4% |
| 3m4pA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 44.0 | 4.52e-01 | 73.9% | 78.6% |
| 2f4iA02 | 2.40.50.420 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Envelope glycoprotein gp160, DUF2291, alpha/beta domain | 0.60 | 41.0 | 4.16e-01 | 73.9% | 70.4% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 30.0 | 3.65e-01 | 89.1% | 73.7% |
| 3o2zP00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 46.0 | 4.68e-01 | 84.9% | 83.6% |
| 3m7nA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 39.0 | 4.50e-01 | 76.5% | 94.2% |
| 1jt8A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 35.0 | 3.73e-01 | 73.9% | 68.6% |
| 2c35B02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 40.0 | 4.50e-01 | 76.5% | 97.8% |
| 2k4yA00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.54 | 28.0 | 3.29e-01 | 79.8% | 68.6% |
| 2rf4E02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 37.0 | 4.25e-01 | 74.8% | 100.0% |
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.52 | 27.0 | 3.44e-01 | 74.8% | 94.8% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 29.0 | 3.25e-01 | 99.2% | 68.8% |
ECOD (92)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954340 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.85 | 72.0 | 7.26e-01 | 98.3% | 89.2% |
| 3385491 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.84 | 71.0 | 6.34e-01 | 99.2% | 65.6% |
| 5054098 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.83 | 70.0 | 6.91e-01 | 99.2% | 84.8% |
| 4935079 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.83 | 70.0 | 6.82e-01 | 89.1% | 99.2% |
| 3518837 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.82 | 61.0 | 5.99e-01 | 83.2% | 72.0% |
| 3599639 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.82 | 76.0 | 6.99e-01 | 99.2% | 80.7% |
| 3642215 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.82 | 73.0 | 6.41e-01 | 99.2% | 67.9% |
| 3921697 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.81 | 65.0 | 6.79e-01 | 98.3% | 90.9% |
| 4928964 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.81 | 72.0 | 7.39e-01 | 99.2% | 98.3% |
| 3276512 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.81 | 69.0 | 6.70e-01 | 99.2% | 82.3% |
| 3261189 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 71.0 | 6.26e-01 | 99.2% | 67.3% |
| 3407825 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.80 | 61.0 | 6.77e-01 | 91.6% | 98.9% |
| 3972842 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 71.0 | 6.92e-01 | 96.6% | 86.2% |
| 3765273 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.80 | 61.0 | 6.49e-01 | 87.4% | 89.5% |
| 4965290 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 74.0 | 6.77e-01 | 98.3% | 88.7% |
| 3883142 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.80 | 64.0 | 6.81e-01 | 90.8% | 95.2% |
| 3776626 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 69.0 | 6.34e-01 | 99.2% | 73.2% |
| 3965688 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 70.0 | 6.74e-01 | 99.2% | 83.0% |
| 3561627 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.79 | 62.0 | 6.61e-01 | 88.2% | 92.4% |
| 3894374 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.79 | 68.0 | 6.64e-01 | 99.2% | 83.8% |
| 4026268 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.79 | 74.0 | 6.46e-01 | 100.0% | 76.5% |
| 3565765 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.78 | 63.0 | 5.94e-01 | 89.9% | 71.4% |
| 4022903 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.78 | 73.0 | 6.51e-01 | 99.2% | 74.4% |
| 4023463 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.78 | 72.0 | 6.64e-01 | 99.2% | 80.7% |
| 3194464 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.78 | 72.0 | 6.41e-01 | 99.2% | 76.4% |
| 4030587 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.78 | 73.0 | 6.42e-01 | 99.2% | 73.3% |
| 3399411 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.78 | 54.0 | 6.11e-01 | 84.0% | 94.4% |
| 3582420 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.78 | 72.0 | 6.27e-01 | 99.2% | 68.8% |
| 4929215 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.78 | 71.0 | 7.13e-01 | 99.2% | 97.5% |
| 3514190 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.77 | 62.0 | 6.50e-01 | 87.4% | 90.9% |
| 3738104 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.77 | 71.0 | 6.34e-01 | 99.2% | 78.2% |
| 3277340 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.77 | 72.0 | 6.46e-01 | 100.0% | 76.2% |
| 3881122 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.77 | 63.0 | 6.40e-01 | 90.8% | 88.7% |
| 3881120 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.77 | 62.0 | 6.60e-01 | 100.0% | 97.1% |
| 3785406 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.76 | 70.0 | 6.17e-01 | 99.2% | 78.8% |
| 3596660 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.76 | 67.0 | 6.44e-01 | 99.2% | 83.0% |
| 4026269 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.76 | 70.0 | 6.65e-01 | 99.2% | 89.3% |
| 3577387 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.76 | 63.0 | 6.47e-01 | 87.4% | 97.4% |
| 4459066 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.76 | 59.0 | 5.60e-01 | 86.6% | 69.3% |
| 4075688 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.76 | 65.0 | 5.02e-01 | 100.0% | 44.1% |
| 3847353 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.76 | 59.0 | 6.16e-01 | 84.0% | 88.2% |
| 3914796 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.76 | 59.0 | 6.18e-01 | 85.7% | 88.2% |
| 3424596 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.76 | 70.0 | 6.56e-01 | 100.0% | 86.2% |
| 3397365 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.75 | 61.0 | 6.20e-01 | 89.9% | 87.0% |
| 3949229 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.75 | 70.0 | 6.51e-01 | 99.2% | 82.1% |
| 3596661 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.75 | 68.0 | 5.95e-01 | 98.3% | 74.9% |
| 3261239 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.75 | 68.0 | 6.07e-01 | 98.3% | 79.4% |
| 3611847 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.75 | 67.0 | 5.97e-01 | 99.2% | 69.1% |
| 4342660 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.74 | 36.0 | 4.58e-01 | 71.4% | 78.6% |
| 3807059 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.74 | 69.0 | 5.82e-01 | 99.2% | 89.7% |
| 3195528 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.73 | 67.0 | 6.37e-01 | 99.2% | 85.0% |
| 3620906 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 43.0 | 5.33e-01 | 73.1% | 93.3% |
| 335 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.73 | 45.0 | 5.17e-01 | 73.1% | 85.9% |
| 3515845 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.73 | 68.0 | 5.56e-01 | 100.0% | 62.0% |
| 3401711 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.73 | 63.0 | 5.75e-01 | 93.3% | 72.0% |
| 3995470 | 2.1.1.217 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd | 0.72 | 38.0 | 4.89e-01 | 73.1% | 88.6% |
| 4933241 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.72 | 37.0 | 5.00e-01 | 73.1% | 98.3% |
| 3533869 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.72 | 62.0 | 5.83e-01 | 91.6% | 77.9% |
| 4178916 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.71 | 36.0 | 4.69e-01 | 73.1% | 87.7% |
| 3414735 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.71 | 55.0 | 5.70e-01 | 84.9% | 87.3% |
| 3622421 | 2.1.1.217 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd | 0.71 | 39.0 | 4.88e-01 | 73.1% | 90.0% |
| 4490085 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.71 | 43.0 | 5.35e-01 | 96.6% | 97.3% |
| 3616994 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 39.0 | 4.49e-01 | 73.1% | 74.1% |
| 3516360 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.71 | 51.0 | 5.56e-01 | 74.8% | 89.0% |
| 3516864 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.71 | 57.0 | 5.69e-01 | 84.9% | 83.3% |
| 5067743 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 40.0 | 4.42e-01 | 73.1% | 69.5% |
| 3924618 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.70 | 56.0 | 4.94e-01 | 85.7% | 91.4% |
| 3237110 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.70 | 60.0 | 5.52e-01 | 92.4% | 86.0% |
| 3230484 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.69 | 58.0 | 5.85e-01 | 89.1% | 90.0% |
| 4287649 | 2.1.1.104 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_1st | 0.69 | 39.0 | 4.93e-01 | 95.8% | 94.3% |
| 3242802 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 37.0 | 4.44e-01 | 73.1% | 78.8% |
| 3765275 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.68 | 63.0 | 6.09e-01 | 100.0% | 95.4% |
| 4281059 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.67 | 55.0 | 5.78e-01 | 95.8% | 94.5% |
| 3991015 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.67 | 59.0 | 5.49e-01 | 94.1% | 89.0% |
| 4210874 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.67 | 42.0 | 4.87e-01 | 75.6% | 88.2% |
| 4215867 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.66 | 34.0 | 4.34e-01 | 73.1% | 84.3% |
| 3553354 | 2.1.1.87 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RPA43_OB | 0.66 | 43.0 | 4.92e-01 | 76.5% | 90.6% |
| 336 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 39.0 | 4.24e-01 | 75.6% | 68.6% |
| 4024020 | 2.1.1.109 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 | 0.65 | 45.0 | 4.97e-01 | 76.5% | 88.4% |
| 3498011 | 2.1.1.116 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 | 0.65 | 42.0 | 4.43e-01 | 100.0% | 73.3% |
| 3183653 | 2.1.1.109 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 | 0.64 | 44.0 | 4.72e-01 | 76.5% | 81.0% |
| 4021136 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 44.0 | 4.88e-01 | 76.5% | 89.5% |
| 3510518 | 2.1.1.236 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29292 | 0.62 | 41.0 | 4.76e-01 | 73.1% | 95.3% |
| 3383363 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.61 | 41.0 | 4.69e-01 | 70.6% | 91.1% |
| 3854815 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.61 | 44.0 | 4.85e-01 | 89.9% | 93.7% |
| 3242801 | 2.1.1.217 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd | 0.61 | 37.0 | 4.47e-01 | 73.1% | 94.7% |
| 3930533 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.60 | 36.0 | 4.39e-01 | 70.6% | 94.7% |
| 4545465 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.59 | 35.0 | 4.25e-01 | 73.9% | 94.7% |
| 4932551 | 2.1.1.11 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a | 0.58 | 35.0 | 3.92e-01 | 73.9% | 77.8% |
| 3253124 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.58 | 46.0 | 4.77e-01 | 96.6% | 91.8% |
| 4204828 | 1.1.9.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 | 0.57 | 31.0 | 3.91e-01 | 73.9% | 88.6% |
| 3617000 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 42.0 | 4.57e-01 | 98.3% | 92.0% |
D2
high
residues 1543-1608
Domain cluster:
representative
CATH (64)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.81 | 56.0 | 4.53e-01 | 100.0% | 41.2% |
| 4i4cB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.76 | 52.0 | 3.18e-01 | 71.2% | 17.8% |
| 4gouA01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.75 | 66.0 | 5.11e-01 | 100.0% | 54.7% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 53.0 | 4.44e-01 | 74.2% | 85.3% |
| 2acxA01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.74 | 65.0 | 4.58e-01 | 100.0% | 38.5% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.72 | 65.0 | 5.37e-01 | 100.0% | 80.9% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.72 | 64.0 | 5.46e-01 | 100.0% | 83.3% |
| 5tgtA02 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 64.0 | 5.10e-01 | 95.5% | 69.1% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.71 | 61.0 | 5.80e-01 | 100.0% | 96.3% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.70 | 61.0 | 5.07e-01 | 100.0% | 59.5% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.69 | 47.0 | 4.30e-01 | 71.2% | 79.8% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.69 | 58.0 | 4.94e-01 | 100.0% | 79.8% |
| 3c4wB01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.69 | 59.0 | 4.29e-01 | 100.0% | 38.1% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.68 | 49.0 | 4.23e-01 | 75.8% | 77.9% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.67 | 59.0 | 5.64e-01 | 97.0% | 96.1% |
| 2a72A00 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.67 | 46.0 | 3.73e-01 | 74.2% | 47.4% |
| 2v0cA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 53.0 | 4.05e-01 | 87.9% | 56.0% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.66 | 46.0 | 4.09e-01 | 74.2% | 66.7% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.66 | 45.0 | 4.17e-01 | 71.2% | 84.7% |
| 4py6C00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.65 | 45.0 | 3.67e-01 | 72.7% | 65.4% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.65 | 47.0 | 4.38e-01 | 77.3% | 97.6% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.65 | 45.0 | 3.76e-01 | 72.7% | 82.1% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.65 | 44.0 | 3.79e-01 | 71.2% | 66.4% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 45.0 | 4.37e-01 | 72.7% | 78.7% |
| 3k2jA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.65 | 44.0 | 3.70e-01 | 72.7% | 67.8% |
| 1h97A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 49.0 | 3.78e-01 | 81.8% | 53.7% |
| 5o5jT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.64 | 45.0 | 4.18e-01 | 74.2% | 75.3% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.64 | 47.0 | 3.40e-01 | 100.0% | 28.3% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.64 | 47.0 | 4.86e-01 | 80.3% | 93.7% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 51.0 | 4.33e-01 | 98.5% | 100.0% |
| 3nrhA00 | 1.20.120.1550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 | 0.62 | 54.0 | 4.13e-01 | 100.0% | 74.1% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 43.0 | 3.82e-01 | 72.7% | 73.7% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 45.0 | 4.17e-01 | 100.0% | 61.4% |
| 4h79A00 | 1.10.520.40 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 | 0.61 | 49.0 | 3.77e-01 | 95.5% | 39.5% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 49.0 | 4.57e-01 | 95.5% | 86.5% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 3.63e-01 | 98.5% | 38.5% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 44.0 | 3.53e-01 | 77.3% | 85.5% |
| 3lewA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 51.0 | 3.33e-01 | 100.0% | 27.0% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 44.0 | 3.53e-01 | 81.8% | 56.0% |
| 1iuqA01 | 1.10.1200.50 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal | 0.59 | 52.0 | 4.97e-01 | 100.0% | 98.7% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.59 | 43.0 | 4.54e-01 | 78.8% | 100.0% |
| 2gnoA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.59 | 50.0 | 4.40e-01 | 97.0% | 85.0% |
| 4gyoA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 48.0 | 3.45e-01 | 98.5% | 33.6% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.57 | 42.0 | 3.63e-01 | 80.3% | 51.4% |
| 5jicA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 46.0 | 3.40e-01 | 89.4% | 97.3% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 3.47e-01 | 75.8% | 84.3% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 48.0 | 4.10e-01 | 95.5% | 100.0% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 52.0 | 4.15e-01 | 100.0% | 66.9% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 4.19e-01 | 86.4% | 92.0% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 47.0 | 3.95e-01 | 95.5% | 100.0% |
| 6j3eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 44.0 | 3.44e-01 | 90.9% | 92.1% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 48.0 | 4.04e-01 | 98.5% | 78.9% |
| 2zwiA01 | 3.40.50.11120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain | 0.53 | 43.0 | 3.12e-01 | 93.9% | 54.1% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.53 | 46.0 | 4.17e-01 | 100.0% | 94.5% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 47.0 | 3.86e-01 | 100.0% | 95.9% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 46.0 | 3.96e-01 | 100.0% | 86.2% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.25e-01 | 98.5% | 85.1% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 46.0 | 3.74e-01 | 100.0% | 76.2% |
| 2z1dA01 | 3.40.50.11750 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 | 0.52 | 46.0 | 3.60e-01 | 98.5% | 73.0% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 46.0 | 3.59e-01 | 100.0% | 47.9% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 39.0 | 3.03e-01 | 83.3% | 70.3% |
| 5v07Z02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.52 | 35.0 | 3.38e-01 | 71.2% | 73.1% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 46.0 | 3.86e-01 | 98.5% | 78.9% |
| 3a5yA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 45.0 | 2.94e-01 | 98.5% | 83.5% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3363017 | 601.1.1.51 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › IPGAL1_C | 0.80 | 50.0 | 3.77e-01 | 100.0% | 28.2% |
| 1503807 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.78 | 70.0 | 5.79e-01 | 100.0% | 85.2% |
| 4314104 | 601.3.1.10 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF30376 | 0.77 | 67.0 | 4.99e-01 | 100.0% | 49.4% |
| 4949854 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.76 | 68.0 | 5.68e-01 | 100.0% | 95.6% |
| 5028635 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.74 | 66.0 | 5.10e-01 | 100.0% | 48.3% |
| 4997097 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.73 | 48.0 | 4.65e-01 | 98.5% | 60.0% |
| 3709004 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.73 | 51.0 | 5.49e-01 | 84.8% | 87.3% |
| 3839570 | 601.51.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › FliS_cochap | 0.73 | 65.0 | 5.03e-01 | 100.0% | 64.1% |
| 3959009 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.73 | 47.0 | 4.81e-01 | 86.4% | 67.7% |
| 3884123 | 601.4.1.75 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PF27561 | 0.71 | 61.0 | 4.55e-01 | 100.0% | 77.8% |
| 4944283 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 61.0 | 4.86e-01 | 100.0% | 92.9% |
| 3269094 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.70 | 48.0 | 4.97e-01 | 71.2% | 96.7% |
| 3526861 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.70 | 49.0 | 4.15e-01 | 74.2% | 79.1% |
| 3482781 | 196.1.1.0 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS | 0.69 | 60.0 | 4.36e-01 | 100.0% | 42.1% |
| 2089782 | 601.56.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Contact-dependent inhibitor I (CdiI) › Contact-dependent inhibitor I (CdiI) › CdiI-like | 0.69 | 54.0 | 4.67e-01 | 86.4% | 76.6% |
| 3583890 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.69 | 49.0 | 3.77e-01 | 74.2% | 60.0% |
| 4483437 | 601.13.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS | 0.69 | 62.0 | 4.93e-01 | 100.0% | 66.2% |
| 3187995 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.69 | 49.0 | 4.07e-01 | 100.0% | 44.5% |
| 3963106 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 59.0 | 5.60e-01 | 100.0% | 81.2% |
| 3173073 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.68 | 51.0 | 3.22e-01 | 100.0% | 17.3% |
| 3330505 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.68 | 48.0 | 4.22e-01 | 74.2% | 87.0% |
| 4270503 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.68 | 47.0 | 4.33e-01 | 71.2% | 77.6% |
| 3353941 | 1134.1.1.7 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 | 0.68 | 48.0 | 4.86e-01 | 74.2% | 90.8% |
| 3708249 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.68 | 59.0 | 4.02e-01 | 100.0% | 44.7% |
| 5001327 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.68 | 58.0 | 5.27e-01 | 98.5% | 100.0% |
| 3514842 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.67 | 48.0 | 4.09e-01 | 74.2% | 82.9% |
| 4982047 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.67 | 45.0 | 4.40e-01 | 93.9% | 64.3% |
| 3934374 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.67 | 59.0 | 4.49e-01 | 100.0% | 43.2% |
| 5009902 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 49.0 | 3.88e-01 | 80.3% | 48.6% |
| 3786136 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.66 | 47.0 | 3.91e-01 | 74.2% | 75.7% |
| 5051841 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.66 | 57.0 | 5.26e-01 | 98.5% | 100.0% |
| 3340945 | 9001.1.1.1 ↗ | alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TRAM_LAG1_CLN8 | 0.66 | 55.0 | 3.90e-01 | 100.0% | 45.5% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.65 | 49.0 | 4.88e-01 | 84.8% | 76.8% |
| 3387796 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.65 | 46.0 | 4.19e-01 | 74.2% | 72.2% |
| 3533309 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.64 | 46.0 | 3.99e-01 | 75.8% | 82.9% |
| 4096159 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 50.0 | 4.59e-01 | 84.8% | 72.9% |
| 3966774 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.63 | 49.0 | 4.64e-01 | 84.8% | 76.2% |
| 4927975 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.63 | 54.0 | 3.54e-01 | 97.0% | 38.0% |
| 3380884 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.63 | 44.0 | 4.21e-01 | 72.7% | 98.7% |
| 4083216 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 48.0 | 4.38e-01 | 83.3% | 70.0% |
| 4060070 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 48.0 | 4.58e-01 | 84.8% | 76.2% |
| 5077120 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.62 | 52.0 | 3.49e-01 | 90.9% | 40.8% |
| 4289855 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.62 | 43.0 | 4.38e-01 | 74.2% | 93.8% |
| 3244449 | 3755.3.1.408 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Zw10_N | 0.62 | 53.0 | 3.93e-01 | 100.0% | 72.8% |
| 150150 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.61 | 43.0 | 3.84e-01 | 74.2% | 64.9% |
| 3252760 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.61 | 49.0 | 4.05e-01 | 100.0% | 50.0% |
| 3794795 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.61 | 55.0 | 4.64e-01 | 100.0% | 62.0% |
| 3615513 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 42.0 | 3.18e-01 | 72.7% | 40.6% |
| 3467056 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.60 | 50.0 | 3.63e-01 | 90.9% | 46.1% |
| 51166 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.60 | 44.0 | 3.47e-01 | 80.3% | 54.7% |
| 5047565 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 4.11e-01 | 90.9% | 64.5% |
| 5029931 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 45.0 | 4.44e-01 | 83.3% | 82.9% |
| 4095580 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.58 | 42.0 | 3.76e-01 | 74.2% | 67.4% |
| 3390932 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 42.0 | 3.86e-01 | 77.3% | 77.8% |
| None | — | 0.58 | 40.0 | 2.79e-01 | 71.2% | 37.7% | |
| 3639507 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 52.0 | 3.24e-01 | 100.0% | 30.1% |
| 5079848 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.57 | 47.0 | 4.97e-01 | 100.0% | 98.3% |
| 3963201 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 3.78e-01 | 100.0% | 86.0% |
| 3623654 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 4.04e-01 | 100.0% | 62.6% |
| 3922189 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.55 | 45.0 | 4.47e-01 | 89.4% | 91.4% |
| 3683769 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.55 | 45.0 | 2.76e-01 | 93.9% | 22.9% |
| 4016111 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.55 | 38.0 | 3.71e-01 | 74.2% | 89.3% |
| 5035520 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 48.0 | 3.43e-01 | 100.0% | 47.5% |
| 3931763 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 4.01e-01 | 100.0% | 84.3% |
| 3662622 | 109.4.1.1273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 | 0.55 | 47.0 | 3.43e-01 | 100.0% | 56.4% |
| 4223251 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.51 | 45.0 | 3.48e-01 | 100.0% | 44.8% |
D3
medium
residues 651-713
Domain cluster:
representative
D4
medium
residues 714-756_846-895
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249566 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.52 | 35.0 | 3.23e-01 | 93.5% | 53.3% |
| 3219299 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.50 | 40.0 | 3.60e-01 | 90.3% | 82.9% |
D5
medium
residues 1010-1147
Domain cluster:
rep: MN698246.1__QGZ18180.1__HTVC112P_gp03__00003__D120-243
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.81 | 66.0 | 5.66e-01 | 100.0% | 56.3% |
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.80 | 64.0 | 5.63e-01 | 97.1% | 59.3% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.76 | 62.0 | 5.18e-01 | 97.1% | 52.4% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.68 | 39.0 | 4.24e-01 | 97.1% | 66.4% |
| 3k93A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.67 | 63.0 | 5.27e-01 | 100.0% | 64.1% |
| 6ll8A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.64 | 38.0 | 4.05e-01 | 94.9% | 66.7% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.63 | 54.0 | 4.73e-01 | 100.0% | 61.8% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 43.0 | 4.20e-01 | 95.7% | 63.2% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.61 | 51.0 | 4.67e-01 | 98.6% | 67.9% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.59 | 36.0 | 3.68e-01 | 94.2% | 60.0% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.59 | 32.0 | 3.44e-01 | 100.0% | 61.2% |
| 7n7zA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 34.0 | 3.49e-01 | 94.9% | 56.9% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 35.0 | 4.07e-01 | 81.2% | 86.5% |
| 3gwaA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 36.0 | 3.35e-01 | 94.2% | 51.1% |
| 2x3eA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 35.0 | 3.33e-01 | 94.9% | 52.0% |
| 3il6A01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 35.0 | 3.33e-01 | 94.9% | 52.4% |
| 4lg3A01 | 3.10.310.90 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.53 | 35.0 | 3.61e-01 | 94.2% | 68.7% |
| 2p14A00 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.52 | 46.0 | 4.14e-01 | 94.9% | 83.3% |
| 5k9nB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.96e-01 | 96.4% | 92.3% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.51 | 38.0 | 4.07e-01 | 78.3% | 96.0% |
| 1atnD00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.51 | 46.0 | 3.75e-01 | 98.6% | 56.6% |
| 4fd5A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 45.0 | 3.87e-01 | 97.1% | 90.7% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 45.0 | 3.87e-01 | 96.4% | 91.0% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.88 | 61.0 | 5.35e-01 | 100.0% | 51.1% |
| 4942551 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.85 | 73.0 | 6.03e-01 | 100.0% | 55.5% |
| 4955488 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.83 | 57.0 | 6.38e-01 | 95.7% | 88.2% |
| 4968758 | 2008.1.1.224 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 | 0.81 | 54.0 | 6.47e-01 | 92.8% | 98.9% |
| 4955137 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.80 | 60.0 | 5.42e-01 | 100.0% | 59.4% |
| 3945442 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.79 | 63.0 | 5.39e-01 | 97.1% | 55.1% |
| 3969697 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.79 | 63.0 | 6.07e-01 | 97.8% | 73.5% |
| 5012863 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.78 | 70.0 | 6.10e-01 | 100.0% | 65.6% |
| 4957822 | 2008.1.1.224 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 | 0.78 | 55.0 | 5.77e-01 | 94.2% | 77.5% |
| 5023848 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.78 | 39.0 | 4.10e-01 | 79.0% | 52.3% |
| 3395555 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.77 | 62.0 | 5.09e-01 | 96.4% | 48.9% |
| 424674 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.76 | 63.0 | 5.18e-01 | 97.1% | 51.5% |
| 5038948 | 2008.1.1.224 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 | 0.76 | 54.0 | 5.79e-01 | 94.2% | 84.0% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.76 | 64.0 | 5.45e-01 | 97.1% | 58.5% |
| 4660505 | 2008.1.1.186 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_9 | 0.73 | 54.0 | 5.30e-01 | 96.4% | 71.7% |
| 5005960 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.73 | 57.0 | 5.15e-01 | 100.0% | 61.4% |
| 3614493 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 66.0 | 5.02e-01 | 100.0% | 78.0% |
| 3270711 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.69 | 47.0 | 4.90e-01 | 92.8% | 74.6% |
| 5056632 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 65.0 | 5.26e-01 | 100.0% | 71.2% |
| 5021943 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.65 | 62.0 | 5.04e-01 | 100.0% | 67.1% |
| 4936990 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.65 | 38.0 | 4.15e-01 | 97.1% | 68.6% |
| 4960647 | 3535.1.1.0 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 | 0.64 | 40.0 | 4.39e-01 | 75.4% | 75.7% |
| 3716928 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.63 | 57.0 | 5.13e-01 | 97.8% | 74.6% |
| 3174811 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.62 | 49.0 | 5.22e-01 | 89.9% | 93.5% |
| 1560740 | 2008.1.1.65 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › L_protein_N | 0.62 | 53.0 | 4.22e-01 | 99.3% | 46.8% |
| 3880826 | 2008.1.1.127 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2+RAP | 0.61 | 49.0 | 5.16e-01 | 91.3% | 92.8% |
| 4933935 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.61 | 57.0 | 4.39e-01 | 100.0% | 63.8% |
| 4945842 | 7509.1.1.0 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like | 0.61 | 47.0 | 5.05e-01 | 92.8% | 94.2% |
| 4947565 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.61 | 57.0 | 4.30e-01 | 100.0% | 64.3% |
| 3515746 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.61 | 42.0 | 3.99e-01 | 76.1% | 60.0% |
| 3592513 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 56.0 | 4.14e-01 | 100.0% | 50.7% |
| 3607869 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.60 | 56.0 | 4.27e-01 | 100.0% | 57.4% |
| 3740219 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.60 | 36.0 | 3.67e-01 | 93.5% | 59.3% |
| 3599082 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.60 | 37.0 | 3.72e-01 | 97.1% | 59.3% |
| 3276755 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.59 | 54.0 | 3.92e-01 | 100.0% | 39.7% |
| 3263633 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.59 | 55.0 | 4.02e-01 | 100.0% | 42.6% |
| 3691245 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.59 | 55.0 | 4.43e-01 | 100.0% | 58.4% |
| 4660186 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.58 | 53.0 | 4.19e-01 | 100.0% | 63.9% |
| 3244616 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.58 | 48.0 | 3.65e-01 | 97.1% | 37.4% |
| 3939159 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.58 | 53.0 | 3.97e-01 | 100.0% | 48.7% |
| 4026339 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.58 | 36.0 | 3.50e-01 | 100.0% | 56.8% |
| 3869106 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.58 | 52.0 | 3.87e-01 | 100.0% | 47.9% |
| 3788787 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.57 | 35.0 | 3.45e-01 | 100.0% | 55.3% |
| 3628154 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.57 | 53.0 | 3.97e-01 | 100.0% | 47.7% |
| 3393164 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.57 | 51.0 | 3.75e-01 | 100.0% | 46.6% |
| 1155793 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.56 | 36.0 | 3.62e-01 | 94.9% | 61.1% |
| 3486967 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.55 | 36.0 | 3.55e-01 | 94.2% | 61.3% |
| 3329729 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.55 | 35.0 | 3.48e-01 | 94.9% | 60.0% |
| 4502242 | 7581.1.1.23 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ACP_syn_III | 0.55 | 35.0 | 3.26e-01 | 94.9% | 49.4% |
| 3477161 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.55 | 36.0 | 3.52e-01 | 94.2% | 61.3% |
| 3225101 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 31.0 | 3.27e-01 | 77.5% | 63.2% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 27.0 | 3.64e-01 | 79.0% | 100.0% |
| 3548841 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.51 | 44.0 | 3.48e-01 | 92.8% | 78.9% |
| 5074452 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.51 | 38.0 | 2.90e-01 | 96.4% | 32.9% |
D6
medium
residues 1485-1524_1696-1779
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 42.0 | 4.05e-01 | 79.8% | 62.4% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.60 | 46.0 | 3.87e-01 | 81.5% | 94.9% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.56 | 32.0 | 3.50e-01 | 80.6% | 67.7% |
| 2g3vA00 | 1.20.120.1140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CAG pathogenicity island protein 13, CagS | 0.53 | 35.0 | 3.26e-01 | 96.8% | 50.9% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 41.0 | 4.16e-01 | 83.1% | 93.5% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 41.0 | 3.81e-01 | 99.2% | 67.7% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.50 | 45.0 | 4.06e-01 | 98.4% | 96.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787874 | 180.1.1.6 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT | 0.53 | 43.0 | 3.65e-01 | 85.5% | 63.0% |
| 4928624 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.52 | 38.0 | 3.40e-01 | 75.8% | 66.3% |
| 3570384 | 3573.1.1.1 ↗ | alpha arrays › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › Histone RNA hairpin-binding protein RNA-binding domain › SLBP_RNA_bind | 0.52 | 27.0 | 3.06e-01 | 92.7% | 66.3% |
| 3594664 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.51 | 38.0 | 2.73e-01 | 78.2% | 73.8% |
| 3939383 | 603.1.1.19 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-18_N | 0.51 | 36.0 | 3.05e-01 | 74.2% | 51.0% |