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gwd2_scaffold_22_prodigal-single.1__X__X__00081

Bact-Vir

gwd2_scaffold_22_prodigal-single.1__X__X__00081

Identity

Kingdom:
phage

Quality

91.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-31
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dl6A00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 45.0 3.90e-01 100.0% 51.7%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 39.0 2.83e-01 100.0% 43.6%
2p62A01 3.40.50.10620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains 0.51 37.0 2.54e-01 87.1% 41.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.85 58.0 4.57e-01 100.0% 36.7%
3991930 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 5.38e-01 100.0% 82.9%
4674239 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.66 53.0 5.20e-01 100.0% 91.4%
4431820 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.65 47.0 4.22e-01 100.0% 53.3%
3216830 375.1.1.76 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 0.65 47.0 4.76e-01 100.0% 96.7%
3229559 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 41.0 2.35e-01 100.0% 9.1%