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gwd2_scaffold_22_prodigal-single.1__X__X__00104
Bact-Virgwd2_scaffold_22_prodigal-single.1__X__X__00104
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-144_166-208
Domain cluster:
rep: IMGVR_UViG_3300020079_000070-3300020079-Ga0187906_100258017__D1-167
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 47.4 | 3.40e-12 | 78.5% | 61.5% |
D2
medium
residues 145-165_209-243
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 39.0 | 3.68e-01 | 78.6% | 74.3% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 43.0 | 3.54e-01 | 96.4% | 64.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4095580 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.59 | 47.0 | 4.07e-01 | 92.9% | 53.7% |
| 4048456 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.59 | 47.0 | 4.15e-01 | 94.6% | 57.8% |
| 4567001 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.58 | 46.0 | 3.94e-01 | 92.9% | 53.7% |
| 4147954 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.57 | 46.0 | 4.01e-01 | 94.6% | 57.8% |
| 4100346 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.54 | 38.0 | 3.59e-01 | 92.9% | 60.0% |
| 3519647 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.53 | 42.0 | 3.02e-01 | 92.9% | 29.1% |
| 3198110 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.53 | 40.0 | 2.93e-01 | 91.1% | 42.0% |