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gwd2_scaffold_22_prodigal-single.1__X__X__00141

Bact-Vir

gwd2_scaffold_22_prodigal-single.1__X__X__00141

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.68 39.0 4.35e-01 82.7% 71.0%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.67 39.0 4.60e-01 88.0% 84.6%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 33.0 3.48e-01 77.3% 52.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.64 40.0 4.27e-01 97.3% 73.4%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 39.0 4.15e-01 94.7% 70.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 39.0 4.03e-01 100.0% 68.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 34.0 3.87e-01 84.0% 73.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 39.0 4.37e-01 97.3% 86.4%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 33.0 3.60e-01 81.3% 62.5%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 38.0 3.63e-01 100.0% 54.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 32.0 3.37e-01 84.0% 59.7%
2bcqA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 43.0 3.74e-01 81.3% 78.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 32.0 3.39e-01 84.0% 62.1%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 32.0 3.36e-01 82.7% 61.2%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.31e-01 89.3% 87.5%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.56 31.0 2.91e-01 100.0% 40.4%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 33.0 3.29e-01 82.7% 56.4%
4fcaA04 2.60.40.3600 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 36.0 3.64e-01 100.0% 65.4%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 34.0 2.93e-01 93.3% 38.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.81e-01 96.0% 80.6%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.53 44.0 3.47e-01 97.3% 96.0%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.61e-01 93.3% 81.7%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 40.0 2.89e-01 97.3% 48.0%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 42.0 3.51e-01 96.0% 66.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 34.0 3.79e-01 78.7% 63.8%
5053926 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 33.0 3.29e-01 92.0% 47.5%
3589473 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 39.0 3.87e-01 89.3% 61.3%
3988706 243.3.1.13 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.59 39.0 4.07e-01 94.7% 72.9%
3360687 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.59 43.0 3.32e-01 97.3% 35.6%
4366434 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 36.0 3.70e-01 84.0% 64.3%
3639196 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.58 37.0 4.36e-01 92.0% 100.0%
3654011 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.58 42.0 3.75e-01 97.3% 54.3%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 35.0 3.62e-01 84.0% 64.3%
665 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 32.0 3.36e-01 81.3% 59.7%
3591209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 35.0 3.87e-01 70.7% 78.3%
4998346 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.54 37.0 3.08e-01 70.7% 71.5%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.72e-01 100.0% 81.7%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.52 42.0 3.65e-01 88.0% 76.5%
3587789 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 35.0 3.14e-01 70.7% 69.5%
4940942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 4.05e-01 96.0% 75.3%
3658595 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.51 35.0 3.62e-01 78.7% 77.1%