←Back to structures
gwd2_scaffold_22_prodigal-single.1__X__X__00150
Bact-Virgwd2_scaffold_22_prodigal-single.1__X__X__00150
Identity
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-98
Domain cluster:
rep: MG788324.1__AVH85770.1__X__00027__D6-88
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 46.0 | 4.85e-01 | 89.8% | 85.7% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 44.0 | 4.99e-01 | 86.4% | 100.0% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 43.0 | 4.66e-01 | 84.1% | 85.1% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.62 | 46.0 | 3.90e-01 | 80.7% | 89.4% |
| 3vwaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 50.0 | 4.28e-01 | 100.0% | 85.3% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 40.0 | 4.34e-01 | 92.0% | 93.2% |
| 2hsnA02 | 1.20.1050.110 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 42.0 | 3.95e-01 | 100.0% | 66.4% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 48.0 | 4.02e-01 | 100.0% | 64.3% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 4.18e-01 | 89.8% | 87.0% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 4.15e-01 | 89.8% | 87.7% |
| 4dddA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 48.0 | 3.96e-01 | 100.0% | 87.7% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.54 | 39.0 | 3.33e-01 | 76.1% | 47.6% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 3.59e-01 | 100.0% | 51.0% |
| 7r0kB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 37.0 | 2.80e-01 | 86.4% | 26.2% |
| 1s2xA00 | 1.20.190.30 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ | 0.53 | 45.0 | 3.66e-01 | 98.9% | 96.1% |
| 3tbiA00 | 1.10.10.2850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phage late-transcription coactivator-like | 0.52 | 39.0 | 4.23e-01 | 98.9% | 97.2% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 38.0 | 3.67e-01 | 77.3% | 96.1% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.52 | 43.0 | 2.91e-01 | 89.8% | 69.0% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 36.0 | 3.40e-01 | 73.9% | 80.0% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 36.0 | 3.05e-01 | 73.9% | 51.0% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 40.0 | 3.86e-01 | 86.4% | 80.6% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 41.0 | 3.87e-01 | 88.6% | 91.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4508314 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.65 | 44.0 | 5.18e-01 | 80.7% | 98.4% |
| 4638458 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.64 | 43.0 | 4.91e-01 | 79.5% | 93.8% |
| 4393566 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.64 | 43.0 | 4.77e-01 | 79.5% | 87.1% |
| 4179648 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.63 | 44.0 | 5.08e-01 | 87.5% | 100.0% |
| 5054446 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.63 | 43.0 | 3.70e-01 | 85.2% | 44.3% |
| 4395525 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.63 | 43.0 | 4.87e-01 | 85.2% | 95.4% |
| 4192750 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.59 | 43.0 | 3.48e-01 | 76.1% | 74.4% |
| 3245162 | 604.1.1.127 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EMC4 | 0.57 | 46.0 | 4.21e-01 | 88.6% | 73.3% |
| 3743854 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.56 | 45.0 | 2.88e-01 | 100.0% | 15.8% |
| 3803172 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.55 | 42.0 | 3.48e-01 | 81.8% | 86.9% |
| 3715327 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.54 | 40.0 | 3.79e-01 | 81.8% | 64.8% |
| 3792037 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 44.0 | 3.65e-01 | 89.8% | 50.3% |
| 3712669 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.54 | 40.0 | 3.44e-01 | 81.8% | 49.3% |
| 3305347 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.53 | 45.0 | 4.19e-01 | 92.0% | 73.6% |
| 4052932 | 109.4.1.1232 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_SRB8 | 0.53 | 45.0 | 3.58e-01 | 96.6% | 66.3% |
| 3491689 | 604.1.1.159 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM120A-B | 0.52 | 43.0 | 3.89e-01 | 89.8% | 88.3% |
| 3818564 | 109.4.1.1317 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N, VPS53_C | 0.52 | 43.0 | 2.88e-01 | 98.9% | 38.6% |
| 3960303 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 43.0 | 3.34e-01 | 94.3% | 61.0% |