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gwd2_scaffold_22_prodigal-single.1__X__X__00165
Bact-Virgwd2_scaffold_22_prodigal-single.1__X__X__00165
Identity
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cnvA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.53 | 43.0 | 3.23e-01 | 91.7% | 72.9% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 41.0 | 3.60e-01 | 98.3% | 82.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3471125 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 39.0 | 4.25e-01 | 86.7% | 97.8% |
| 3641061 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.51 | 40.0 | 3.06e-01 | 91.7% | 97.5% |
| 3522272 | 1075.1.2.20 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DC_STAMP | 0.51 | 43.0 | 3.35e-01 | 100.0% | 57.2% |
| 5054289 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.50 | 37.0 | 3.66e-01 | 85.0% | 87.7% |
D2
medium
residues 63-123
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.66 | 42.0 | 4.82e-01 | 73.8% | 93.0% |
| 7v8fB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 50.0 | 4.31e-01 | 85.2% | 87.0% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 49.0 | 4.38e-01 | 85.2% | 83.7% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 3.29e-01 | 75.4% | 79.0% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 47.0 | 4.14e-01 | 85.2% | 83.0% |
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 43.0 | 3.10e-01 | 80.3% | 70.8% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.55 | 46.0 | 3.61e-01 | 98.4% | 86.6% |
| 4pz7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 42.0 | 3.32e-01 | 93.4% | 77.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3549240 | 5.1.4.253 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Gbeta | 0.77 | 51.0 | 3.07e-01 | 77.0% | 10.9% |
| 3494950 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 45.0 | 4.13e-01 | 72.1% | 55.0% |
| 3598301 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 43.0 | 3.82e-01 | 72.1% | 46.7% |
| 3892614 | 376.1.1.100 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 | 0.63 | 43.0 | 3.75e-01 | 85.2% | 47.8% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 50.0 | 4.36e-01 | 85.2% | 75.6% |
| 3276004 | 376.1.1.100 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 | 0.62 | 42.0 | 3.75e-01 | 80.3% | 50.6% |
| 3482300 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 49.0 | 4.36e-01 | 85.2% | 87.1% |
| 3358136 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.61 | 48.0 | 4.38e-01 | 85.2% | 90.0% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 51.0 | 5.02e-01 | 91.8% | 86.2% |
| 3263160 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.61 | 48.0 | 4.00e-01 | 85.2% | 71.4% |
| 3392056 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.60 | 48.0 | 4.25e-01 | 85.2% | 84.7% |
| 3573660 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.60 | 48.0 | 4.25e-01 | 85.2% | 85.9% |
| 3891438 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.60 | 47.0 | 4.08e-01 | 85.2% | 90.5% |
| 3342185 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.60 | 47.0 | 4.07e-01 | 85.2% | 74.7% |
| 3368659 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.60 | 46.0 | 4.24e-01 | 83.6% | 83.7% |
| 3498231 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 47.0 | 4.20e-01 | 85.2% | 84.7% |
| 3249848 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.59 | 47.0 | 4.19e-01 | 85.2% | 85.9% |
| 3724405 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 4.29e-01 | 85.2% | 87.5% |
| 4024032 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 4.18e-01 | 85.2% | 88.2% |
| 3457383 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 4.08e-01 | 85.2% | 75.6% |
| 3430765 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.59 | 47.0 | 3.93e-01 | 85.2% | 75.0% |
| 3431026 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.58 | 46.0 | 3.98e-01 | 85.2% | 77.9% |
| 3879122 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 3.12e-01 | 72.1% | 36.9% |
| 3211179 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 45.0 | 4.02e-01 | 85.2% | 81.2% |
| 4030160 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 48.0 | 3.33e-01 | 100.0% | 48.4% |
| 3249194 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 3.27e-01 | 100.0% | 87.3% |