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gwd2_scaffold_22_prodigal-single.1__X__X__00194

Bact-Vir

gwd2_scaffold_22_prodigal-single.1__X__X__00194

Identity

Kingdom:
phage

Quality

95.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-77
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 50.0 3.94e-01 84.2% 82.1%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 50.0 3.88e-01 84.2% 81.1%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.65 46.0 4.90e-01 98.7% 87.7%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 50.0 3.84e-01 84.2% 80.0%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 48.0 3.66e-01 84.2% 47.3%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.62 45.0 4.29e-01 76.3% 70.8%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 55.0 4.17e-01 98.7% 78.3%
4jgjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.81e-01 98.7% 52.0%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 46.0 3.59e-01 84.2% 81.5%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.60 42.0 4.27e-01 76.3% 72.7%
1y00A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.60 36.0 3.88e-01 81.6% 72.1%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 4.38e-01 84.2% 100.0%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 43.0 3.58e-01 76.3% 46.7%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 52.0 4.04e-01 98.7% 77.6%
3dddA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 53.0 4.44e-01 100.0% 80.8%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 45.0 2.88e-01 80.3% 35.6%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 45.0 3.49e-01 84.2% 82.0%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 44.0 3.50e-01 85.5% 49.2%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.89e-01 80.3% 28.1%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 47.0 4.28e-01 89.5% 72.5%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.82e-01 80.3% 25.4%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 50.0 4.16e-01 100.0% 93.6%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.87e-01 81.6% 29.0%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.83e-01 80.3% 26.2%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.85e-01 80.3% 29.7%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 44.0 4.11e-01 85.5% 70.1%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.70e-01 80.3% 22.8%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.71e-01 80.3% 27.7%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 40.0 3.38e-01 76.3% 96.9%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.70e-01 81.6% 42.0%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.68e-01 80.3% 29.8%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 34.0 3.74e-01 98.7% 87.9%
2ynoA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.06e-01 98.7% 91.1%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 44.0 3.06e-01 100.0% 53.7%
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.94e-01 93.4% 72.0%
3otxB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 44.0 3.11e-01 100.0% 92.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.90e-01 96.1% 68.7%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 2.72e-01 90.8% 85.6%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.85e-01 100.0% 89.2%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.89e-01 96.1% 83.4%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3859354 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.71 51.0 3.86e-01 76.3% 38.3%
3842370 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.69 54.0 4.11e-01 84.2% 81.7%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.64 47.0 3.56e-01 76.3% 84.2%
4022346 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.63 44.0 2.88e-01 73.7% 42.6%
3553889 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.63 55.0 4.11e-01 98.7% 72.3%
5074928 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 44.0 4.69e-01 86.8% 89.2%
3881500 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.61 44.0 3.35e-01 76.3% 36.1%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.61 47.0 3.70e-01 86.8% 88.6%
3537454 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.60 50.0 3.84e-01 93.4% 78.3%
3900771 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.60 35.0 3.91e-01 86.8% 73.3%
3740897 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.59 42.0 2.72e-01 73.7% 26.3%
3538099 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 50.0 3.78e-01 92.1% 58.3%
3263687 5.1.4.276 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.59 43.0 2.78e-01 76.3% 24.5%
3565087 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 51.0 3.93e-01 100.0% 63.2%
3793856 5.1.4.421 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.59 45.0 2.61e-01 84.2% 17.8%
3319850 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 44.0 2.81e-01 80.3% 29.9%
3799250 5.1.5.105 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.59 43.0 2.69e-01 76.3% 18.7%
3895829 233.1.1.3 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.59 42.0 3.96e-01 76.3% 61.1%
4028641 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 45.0 2.58e-01 80.3% 12.4%
4236965 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.58 52.0 4.69e-01 98.7% 92.4%
3382444 5.1.4.334 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT140_1st 0.58 45.0 2.82e-01 81.6% 22.9%
4996528 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.58 36.0 4.30e-01 78.9% 96.0%
3651128 5.1.4.334 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT140_1st 0.58 45.0 2.53e-01 81.6% 10.6%
3383977 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 45.0 2.53e-01 81.6% 10.5%
3811371 5.1.4.334 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT140_1st 0.58 45.0 2.81e-01 81.6% 22.3%
3829182 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 45.0 2.54e-01 81.6% 11.1%
3316989 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 44.0 2.79e-01 81.6% 22.1%
4043414 5.1.4.311 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NUP159_NUP214 0.58 43.0 2.88e-01 80.3% 27.9%
None 0.58 44.0 2.70e-01 80.3% 20.0%
3350225 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 43.0 3.04e-01 80.3% 28.1%
3239923 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 37.0 3.50e-01 75.0% 53.7%
3366119 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 43.0 3.07e-01 80.3% 38.7%
3934849 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 41.0 2.66e-01 76.3% 23.5%
3546354 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.57 44.0 2.79e-01 82.9% 76.5%
4054900 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 46.0 3.75e-01 92.1% 63.9%
3455331 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.56 40.0 2.53e-01 73.7% 26.1%
3933713 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.56 40.0 2.75e-01 73.7% 29.0%
4029129 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.77e-01 80.3% 26.5%
4498189 5.1.4.262 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.56 42.0 2.62e-01 78.9% 22.0%
3615236 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 42.0 2.62e-01 80.3% 31.5%
3586660 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 41.0 2.76e-01 78.9% 35.1%
5072132 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.55 45.0 4.46e-01 94.7% 83.7%
4030191 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 42.0 2.41e-01 80.3% 15.0%
3485926 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 2.30e-01 80.3% 8.7%
3549654 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 2.26e-01 80.3% 7.6%
3740730 5.1.4.248 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR55 0.54 41.0 2.70e-01 80.3% 28.9%
5016305 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.54 40.0 3.76e-01 78.9% 90.5%
5045830 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.54 41.0 4.31e-01 80.3% 97.1%
3347499 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 39.0 4.04e-01 75.0% 85.7%
3927259 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 2.93e-01 96.1% 69.5%
5022814 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.54 41.0 4.17e-01 81.6% 98.7%
4976671 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 40.0 4.14e-01 78.9% 92.9%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 41.0 2.56e-01 84.2% 19.5%
3255424 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.53 42.0 3.21e-01 84.2% 43.6%
3709925 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 41.0 2.94e-01 84.2% 52.0%
3442241 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 37.0 2.53e-01 76.3% 29.8%
5021016 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 39.0 3.66e-01 80.3% 76.8%
3918990 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.22e-01 80.3% 9.4%
5075886 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.52 41.0 4.30e-01 85.5% 92.9%
3538071 5.1.4.61 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.52 41.0 2.59e-01 84.2% 19.5%
3178064 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 38.0 3.20e-01 82.9% 79.3%
4572085 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 38.0 3.36e-01 81.6% 90.8%
3624033 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 40.0 3.52e-01 85.5% 98.3%
3538735 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.51 44.0 3.85e-01 98.7% 90.8%
4946134 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.51 38.0 4.07e-01 78.9% 100.0%
3404744 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.81e-01 97.4% 87.9%
4003613 109.46.1.9 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40 0.51 40.0 2.46e-01 85.5% 51.2%
3582902 5.1.10.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.50 40.0 3.43e-01 86.8% 68.0%
4864604 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 39.0 2.90e-01 85.5% 92.4%
4943586 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.50 38.0 3.83e-01 84.2% 97.5%
3443169 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 43.0 3.34e-01 96.1% 53.5%