←Back to structures

gwd2_scaffold_22_prodigal-single.1__X__X__00207

Bact-Vir

gwd2_scaffold_22_prodigal-single.1__X__X__00207

Identity

Kingdom:
phage

Quality

65.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 35.0 3.48e-01 100.0% 50.0%
7ywdB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 40.0 3.47e-01 73.7% 77.7%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 46.0 3.55e-01 100.0% 35.2%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.73e-01 89.5% 73.1%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.89e-01 100.0% 64.3%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.68e-01 87.7% 75.0%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 41.0 3.91e-01 98.2% 64.8%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 43.0 4.11e-01 100.0% 74.6%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.24e-01 100.0% 52.2%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 43.0 3.26e-01 94.7% 64.9%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.32e-01 94.7% 53.3%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 45.0 3.32e-01 100.0% 78.2%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 44.0 3.33e-01 98.2% 98.6%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.51 42.0 3.02e-01 100.0% 84.5%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 38.0 2.97e-01 84.2% 65.5%
1u6lA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 35.0 2.81e-01 73.7% 54.8%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 28.0 2.90e-01 75.4% 50.9%
7x68A01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.50 37.0 3.82e-01 86.0% 96.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3759576 2484.1.1.288 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C 0.66 56.0 3.74e-01 100.0% 63.1%
3569539 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 56.0 4.00e-01 100.0% 90.0%
5072644 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.61 41.0 3.15e-01 70.2% 86.9%
4947372 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 51.0 4.20e-01 100.0% 94.5%
3715980 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.56 48.0 3.20e-01 100.0% 38.0%
3626927 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 41.0 4.21e-01 96.5% 89.1%
3342974 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.55 44.0 3.99e-01 100.0% 88.9%
3937109 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 43.0 2.83e-01 100.0% 34.4%