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gwd2_scaffold_22_prodigal-single.1__X__X__00228

Bact-Vir

gwd2_scaffold_22_prodigal-single.1__X__X__00228

Identity

Kingdom:
phage

Quality

90.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-62
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 68.0 6.90e-01 100.0% 82.3%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 69.0 5.68e-01 100.0% 50.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 71.0 5.30e-01 100.0% 38.7%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 71.0 5.35e-01 100.0% 40.4%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 70.0 5.32e-01 100.0% 40.4%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 67.0 5.00e-01 100.0% 36.3%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 65.0 5.68e-01 100.0% 57.3%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 67.0 5.73e-01 100.0% 56.1%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 67.0 6.66e-01 100.0% 85.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 66.0 5.62e-01 100.0% 55.0%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 67.0 6.64e-01 100.0% 84.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 68.0 6.29e-01 100.0% 72.7%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 5.95e-01 100.0% 65.9%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.93e-01 100.0% 79.4%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.62e-01 100.0% 66.3%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.77 70.0 6.40e-01 100.0% 77.8%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 6.25e-01 100.0% 82.9%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 5.73e-01 100.0% 70.7%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 67.0 5.55e-01 100.0% 58.5%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.99e-01 100.0% 78.8%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.73 60.0 5.81e-01 100.0% 81.4%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 66.0 5.75e-01 100.0% 70.3%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.38e-01 100.0% 67.1%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 65.0 5.41e-01 100.0% 60.2%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 61.0 4.50e-01 100.0% 41.6%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.64 54.0 4.70e-01 100.0% 60.4%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 52.0 4.77e-01 100.0% 85.1%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.57 41.0 4.21e-01 93.5% 79.7%
3hp7A01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.55 38.0 3.80e-01 85.5% 69.2%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.45e-01 100.0% 88.2%
2cxaA01 3.30.70.3550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain 0.55 38.0 3.94e-01 100.0% 78.3%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.55 45.0 3.91e-01 100.0% 79.6%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 47.0 3.52e-01 100.0% 40.1%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 40.0 2.61e-01 87.1% 17.2%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.53 45.0 4.26e-01 100.0% 89.9%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.53 44.0 3.20e-01 98.4% 72.7%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 3.64e-01 100.0% 64.3%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 44.0 3.42e-01 95.2% 59.7%
1cixA00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.52 33.0 3.56e-01 100.0% 90.9%
2cpeA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 35.0 3.22e-01 100.0% 54.1%
5xgbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 42.0 3.09e-01 95.2% 54.2%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 4.01e-01 100.0% 88.9%
6d9mA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 40.0 3.12e-01 93.5% 62.9%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042034 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.90 71.0 5.75e-01 100.0% 47.3%
3794506 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.87 69.0 4.63e-01 100.0% 25.4%
5016090 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 64.0 5.86e-01 100.0% 61.3%
3594128 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 67.0 5.96e-01 100.0% 61.2%
3611205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 66.0 4.95e-01 100.0% 37.1%
3700393 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.83 68.0 4.60e-01 100.0% 25.6%
4985664 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.83 61.0 5.76e-01 100.0% 65.3%
5075049 105.2.1.0 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.83 62.0 4.50e-01 100.0% 30.3%
3718897 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 65.0 6.21e-01 100.0% 74.3%
3181300 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 75.0 5.67e-01 100.0% 49.3%
4988782 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.82 67.0 5.57e-01 100.0% 52.4%
4991088 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 71.0 6.44e-01 100.0% 72.5%
4968723 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 4.81e-01 100.0% 40.8%
3782579 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.81 67.0 5.11e-01 100.0% 40.7%
5054059 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 56.0 5.92e-01 100.0% 81.8%
4934323 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 5.25e-01 100.0% 49.5%
4028116 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.81 66.0 5.91e-01 100.0% 64.7%
3595354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 65.0 4.92e-01 98.4% 38.6%
3936425 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.81 62.0 6.12e-01 100.0% 78.5%
4937110 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.80 65.0 6.12e-01 100.0% 73.3%
3933408 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 62.0 5.71e-01 100.0% 65.0%
4178332 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.80 73.0 4.90e-01 100.0% 29.3%
4387216 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.79 72.0 6.29e-01 100.0% 70.0%
5049027 101.1.2.898 alpha arrays › HTH › HTH › winged helix domain › Fer4_9 0.79 61.0 4.45e-01 100.0% 31.5%
5035277 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 60.0 4.25e-01 100.0% 27.9%
5036586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 71.0 6.34e-01 100.0% 71.8%
3287678 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 69.0 6.27e-01 100.0% 73.8%
4028665 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.78 54.0 3.92e-01 100.0% 26.5%
4938741 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.78 71.0 5.38e-01 100.0% 44.3%
3898882 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 5.53e-01 100.0% 52.2%
4163974 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.78 70.0 4.72e-01 100.0% 29.3%
4585912 101.1.2.603 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.77 67.0 4.08e-01 100.0% 16.0%
4321934 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.77 61.0 4.45e-01 100.0% 33.1%
4289036 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.77 69.0 5.34e-01 100.0% 47.4%
3259953 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 4.62e-01 100.0% 37.2%
4983293 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.76 60.0 5.41e-01 100.0% 62.4%
5031834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 58.0 5.19e-01 100.0% 57.8%
5053762 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 60.0 5.69e-01 100.0% 72.0%
3616697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 59.0 5.83e-01 100.0% 80.0%
3493459 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.75 59.0 5.33e-01 100.0% 62.4%
None 0.75 61.0 3.57e-01 98.4% 11.3%
3829946 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.75 67.0 4.93e-01 100.0% 39.4%
3515741 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 68.0 5.83e-01 100.0% 74.7%
3568884 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.74 66.0 4.80e-01 100.0% 38.2%
4996633 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 67.0 5.87e-01 100.0% 70.0%
3483772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.23e-01 100.0% 63.2%
3781009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 65.0 4.21e-01 100.0% 22.9%
4926933 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 6.14e-01 100.0% 86.3%
2733 101.1.2.117 alpha arrays › HTH › HTH › winged helix domain › F-112 0.73 60.0 5.81e-01 100.0% 81.4%
5048954 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 5.24e-01 100.0% 56.5%
4588402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 64.0 6.03e-01 100.0% 88.0%
3275378 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.72 60.0 4.20e-01 100.0% 30.0%
3989576 101.1.2.80 alpha arrays › HTH › HTH › winged helix domain › RepA_N 0.72 64.0 5.05e-01 100.0% 59.2%
5000057 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 4.87e-01 100.0% 55.0%
3416370 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.70 54.0 5.33e-01 100.0% 78.5%
3928765 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.82e-01 100.0% 61.2%
3337440 101.1.2.497 alpha arrays › HTH › HTH › winged helix domain › PF25874 0.69 62.0 5.59e-01 100.0% 80.0%
3826927 101.1.2.497 alpha arrays › HTH › HTH › winged helix domain › PF25874 0.69 61.0 5.54e-01 100.0% 78.8%
3282348 101.1.2.246 alpha arrays › HTH › HTH › winged helix domain › HTH_PafC 0.66 54.0 5.26e-01 100.0% 82.9%
3529864 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.65 50.0 4.98e-01 100.0% 81.5%
3916322 101.1.1.433 alpha arrays › HTH › HTH › Three-helical HTH › RPC5, RPC5_C 0.63 56.0 3.65e-01 100.0% 26.5%
3698645 101.1.2.123 alpha arrays › HTH › HTH › winged helix domain › Paf67 0.63 54.0 4.77e-01 100.0% 73.7%
4116764 101.1.2.840 alpha arrays › HTH › HTH › winged helix domain › PF29821 0.63 51.0 4.23e-01 100.0% 49.6%
4028119 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.55e-01 100.0% 81.4%
3704498 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 3.55e-01 100.0% 29.5%
3963517 101.1.9.44 alpha arrays › HTH › HTH › Putative DNA-binding domain › PyocinActivator 0.58 50.0 4.66e-01 98.4% 77.5%
3854649 108.1.1.20 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.58 48.0 4.46e-01 98.4% 72.5%
3681396 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 44.0 3.81e-01 98.4% 53.3%
1279060 221.1.2.5 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.55 38.0 3.86e-01 85.5% 72.6%
3620066 3525.1.1.2 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › AHD 0.53 40.0 3.93e-01 100.0% 75.7%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.52 43.0 3.49e-01 100.0% 97.8%
3680333 2003.1.1.142 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, adh_short_C2 0.51 43.0 2.85e-01 100.0% 37.3%
D2 high residues 89-211
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 54.0 5.05e-01 99.2% 72.5%
1d02B00 3.40.580.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A 0.64 57.0 4.87e-01 98.4% 76.5%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.63 57.0 4.32e-01 99.2% 66.0%
3crnA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 44.0 4.34e-01 95.9% 66.7%
2qxyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 43.0 4.40e-01 98.4% 73.1%
1a04A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 42.0 4.19e-01 100.0% 72.6%
1udxA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 4.37e-01 97.6% 64.9%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 51.0 4.52e-01 98.4% 68.2%
1yt8A01 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.56 40.0 4.43e-01 99.2% 93.8%
2hoqA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 36.0 3.33e-01 93.5% 50.0%
4grfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 40.0 3.90e-01 91.1% 65.7%
5macA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.56 50.0 3.70e-01 100.0% 49.5%
2y8kA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 49.0 3.73e-01 100.0% 65.3%
1lu4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 41.0 3.99e-01 95.1% 70.1%
3qnmA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 36.0 3.50e-01 94.3% 57.4%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 40.0 3.35e-01 76.4% 70.6%
3ausA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 49.0 3.88e-01 100.0% 95.0%
3o38B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 49.0 4.00e-01 100.0% 96.2%
3gl3D00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 40.0 3.89e-01 94.3% 68.6%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 36.0 2.82e-01 85.4% 31.2%
1yirA00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.54 47.0 3.32e-01 95.1% 79.2%
2ljaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 39.0 3.63e-01 92.7% 59.9%
3uc9A00 3.40.50.11960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 48.0 4.19e-01 97.6% 65.6%
4qnwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 48.0 3.46e-01 100.0% 72.1%
2im5A00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.54 46.0 3.28e-01 95.1% 78.1%
2f9sB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.82e-01 93.5% 69.9%
2ls5A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.60e-01 90.2% 59.1%
2cvzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 4.32e-01 96.7% 83.3%
1vlpA00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.53 45.0 3.16e-01 95.1% 77.5%
5t5qB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.79e-01 100.0% 97.9%
3eurA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.88e-01 95.1% 71.4%
3kzxA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 34.0 3.28e-01 75.6% 57.2%
3d7lA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.97e-01 100.0% 79.2%
4ospD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.72e-01 99.2% 98.0%
5bt9D00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 45.0 3.66e-01 97.6% 85.7%
3fkfD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 39.0 3.78e-01 91.9% 70.8%
1e5dA01 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 41.0 4.01e-01 100.0% 76.2%
3e58B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 35.0 3.38e-01 94.3% 58.5%
2g25A03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.85e-01 91.1% 100.0%
4hlnA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 39.0 3.32e-01 98.4% 47.4%
1g8kA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.51 42.0 3.44e-01 91.9% 54.3%
5thqA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.67e-01 100.0% 98.8%
2iyeA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 35.0 3.25e-01 87.8% 54.8%
6jtdA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 44.0 3.50e-01 97.6% 94.0%
1ybeB01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.51 43.0 3.07e-01 95.1% 79.2%
3ajdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 43.0 3.70e-01 92.7% 89.2%
1rzuA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 38.0 3.25e-01 98.4% 47.4%
5a62A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 41.0 3.24e-01 90.2% 92.3%
6pznB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 44.0 3.56e-01 97.6% 90.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945413 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.72 58.0 5.15e-01 96.7% 61.2%
5076870 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.72 47.0 4.07e-01 94.3% 45.0%
4950204 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 64.0 5.82e-01 98.4% 95.0%
4960131 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 62.0 5.00e-01 97.6% 66.4%
4967863 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 54.0 5.44e-01 97.6% 81.6%
3990915 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.69 49.0 4.55e-01 98.4% 60.0%
4944782 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 59.0 5.54e-01 96.7% 78.7%
5071081 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 57.0 5.31e-01 96.7% 74.8%
4977513 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.66 59.0 5.42e-01 96.7% 76.8%
149562 2008.1.1.26 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Bse634I 0.65 58.0 4.42e-01 99.2% 66.6%
5049100 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 56.0 4.88e-01 95.9% 70.0%
3615317 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.62 41.0 3.42e-01 86.2% 37.6%
4870619 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.62 40.0 3.90e-01 86.2% 57.1%
4961221 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 38.0 4.04e-01 76.4% 70.0%
3644907 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.61 43.0 4.58e-01 100.0% 84.8%
1123475 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.61 43.0 4.31e-01 98.4% 70.9%
3931534 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 43.0 3.70e-01 82.9% 45.5%
4088504 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.60 40.0 3.93e-01 93.5% 61.5%
3967787 2008.1.1.88 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Tox-REase-5 0.59 50.0 4.84e-01 89.4% 97.8%
4012465 2006.1.4.31 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF7923 0.58 41.0 3.61e-01 71.5% 63.9%
3973595 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.58 38.0 3.83e-01 90.2% 64.8%
3267879 2003.4.1.0 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes 0.57 39.0 3.92e-01 86.2% 66.2%
1412590 247.1.1.7 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › PDEase_II 0.57 50.0 3.62e-01 98.4% 91.7%
3661214 2003.1.1.135 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Castor_Poll_mid 0.56 51.0 3.31e-01 100.0% 35.2%
3816331 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.56 43.0 3.18e-01 86.2% 29.4%
3805016 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.56 43.0 3.09e-01 87.8% 26.6%
5023090 7570.1.1.0 a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain 0.56 41.0 3.97e-01 95.1% 68.9%
3453378 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.56 43.0 3.65e-01 98.4% 48.8%
3940727 2003.1.5.47 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PRMT5 0.56 45.0 4.02e-01 87.8% 64.4%
3315368 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.55 50.0 4.25e-01 100.0% 92.5%
4965514 2008.1.1.227 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5784 0.55 48.0 4.05e-01 98.4% 71.6%
3926272 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 44.0 4.00e-01 87.8% 85.9%
3062314 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.54 42.0 3.10e-01 86.2% 30.2%
4928843 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.54 40.0 3.71e-01 88.6% 60.6%
3724600 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.54 47.0 3.64e-01 97.6% 84.9%
3729482 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.53 47.0 3.65e-01 96.7% 94.8%
4967139 2484.1.1.137 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF2114 0.53 41.0 2.91e-01 82.1% 47.3%
3836058 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.53 40.0 3.78e-01 78.0% 82.8%
4011509 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.53 47.0 4.37e-01 98.4% 78.1%
3315370 2003.1.1.135 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Castor_Poll_mid 0.53 48.0 4.22e-01 100.0% 80.5%
3322623 129.1.1.95 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Castor_Poll_mid 0.53 48.0 4.20e-01 100.0% 80.5%
4296163 2007.1.5.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.53 38.0 3.66e-01 74.8% 64.7%
169665 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.53 40.0 3.86e-01 92.7% 70.7%
4280777 4335.1.1.1 a/b three-layered sandwiches › Nqo1 FMN-binding domain-like › Nqo1 FMN-binding domain-like › Nqo1 FMN-binding domain-like › Complex1_51K 0.53 42.0 3.62e-01 87.0% 56.6%
3614130 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.52 38.0 3.29e-01 74.8% 48.4%
4516265 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.52 46.0 3.11e-01 100.0% 88.4%
3597199 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 38.0 3.21e-01 74.0% 46.0%
3694142 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.52 46.0 4.27e-01 96.7% 89.0%
3976132 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.52 36.0 3.32e-01 89.4% 52.4%
135819 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.52 45.0 3.66e-01 100.0% 98.4%
1518906 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.51 39.0 3.82e-01 95.1% 72.5%
3464663 2003.1.1.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK 0.51 43.0 4.02e-01 93.5% 81.9%
3229375 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.51 46.0 4.03e-01 100.0% 70.3%
2157836 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.51 45.0 3.23e-01 96.7% 71.1%
3606488 2006.1.4.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.51 42.0 3.51e-01 91.9% 82.2%
5023166 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.51 41.0 3.91e-01 87.0% 93.1%
3958257 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.51 40.0 4.18e-01 94.3% 96.4%
4968931 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.50 42.0 4.18e-01 89.4% 93.8%
3476094 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.50 44.0 4.03e-01 99.2% 72.5%