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gwd2_scaffold_22_prodigal-single.1__X__X__00252
Bact-Virgwd2_scaffold_22_prodigal-single.1__X__X__00252
Identity
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-95
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.77 | 51.0 | 4.45e-01 | 77.9% | 46.8% |
| 3zgxA02 | 6.10.140.1720 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 62.0 | 6.31e-01 | 93.7% | 90.1% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.76 | 52.0 | 5.68e-01 | 85.3% | 88.2% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.74 | 67.0 | 4.99e-01 | 100.0% | 68.8% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.73 | 45.0 | 4.51e-01 | 74.7% | 60.8% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.71 | 37.0 | 4.36e-01 | 82.1% | 71.6% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 52.0 | 5.72e-01 | 78.9% | 100.0% |
| 4jgsD00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 57.0 | 5.97e-01 | 89.5% | 98.8% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 51.0 | 4.89e-01 | 82.1% | 70.4% |
| 2j7aC00 | 1.10.3820.10 | Mainly Alpha › Orthogonal Bundle › Multiheme cytochrome fold › Di-heme elbow motif domain | 0.66 | 37.0 | 3.17e-01 | 77.9% | 35.9% |
| 2kinB01 | 1.20.58.980 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 30.0 | 3.21e-01 | 78.9% | 47.5% |
| 3mkoA00 | 6.10.140.1590 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 55.0 | 5.44e-01 | 95.8% | 96.1% |
| 2gbbB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.62 | 43.0 | 3.67e-01 | 71.6% | 76.1% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 44.0 | 4.18e-01 | 81.1% | 81.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595797 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.83 | 55.0 | 5.59e-01 | 85.3% | 68.4% |
| 3547040 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.81 | 74.0 | 6.04e-01 | 100.0% | 72.9% |
| 3590855 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.78 | 71.0 | 4.38e-01 | 100.0% | 18.8% |
| 3596574 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.77 | 70.0 | 5.81e-01 | 100.0% | 59.4% |
| 5047150 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.77 | 69.0 | 5.40e-01 | 100.0% | 55.0% |
| 3229095 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.77 | 69.0 | 6.77e-01 | 97.9% | 92.0% |
| 3702760 | 3660.1.1.0 ↗ | alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG | 0.77 | 60.0 | 5.70e-01 | 93.7% | 70.9% |
| 3881316 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 67.0 | 5.32e-01 | 97.9% | 58.5% |
| 5020110 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 57.0 | 5.65e-01 | 91.6% | 75.0% |
| 3221921 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.75 | 67.0 | 6.59e-01 | 98.9% | 92.0% |
| 3891023 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.74 | 63.0 | 5.12e-01 | 93.7% | 72.2% |
| 3208369 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.74 | 65.0 | 5.22e-01 | 100.0% | 50.3% |
| 3774511 | 3755.3.1.311 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › TTC3 | 0.74 | 65.0 | 4.78e-01 | 97.9% | 36.8% |
| 3434967 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.73 | 47.0 | 4.99e-01 | 78.9% | 72.9% |
| 3276155 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 63.0 | 5.42e-01 | 95.8% | 62.7% |
| 3256828 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.72 | 51.0 | 4.88e-01 | 87.4% | 63.6% |
| 3560925 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.71 | 54.0 | 5.15e-01 | 80.0% | 69.1% |
| 3635376 | 3755.3.1.298 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING | 0.71 | 64.0 | 5.71e-01 | 100.0% | 73.3% |
| 3682276 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.71 | 56.0 | 5.01e-01 | 88.4% | 61.5% |
| 3396867 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 55.0 | 5.42e-01 | 88.4% | 83.0% |
| 3892493 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.67 | 55.0 | 4.78e-01 | 97.9% | 57.9% |
| 3466552 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.66 | 50.0 | 4.39e-01 | 81.1% | 53.1% |
| 4981145 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.65 | 49.0 | 3.35e-01 | 80.0% | 87.7% |
| 3797019 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 53.0 | 3.79e-01 | 100.0% | 97.0% |
| 3972514 | 601.7.1.23 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF294_C | 0.60 | 43.0 | 3.79e-01 | 74.7% | 51.4% |
| 3994910 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.59 | 47.0 | 4.12e-01 | 89.5% | 56.0% |
| 3955855 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.58 | 45.0 | 3.45e-01 | 85.3% | 67.8% |
| 3470112 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.54 | 38.0 | 3.67e-01 | 75.8% | 62.7% |
| 3308318 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.53 | 40.0 | 3.62e-01 | 84.2% | 58.5% |