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gwd2_scaffold_22_prodigal-single.1__X__X__00256
Bact-Virgwd2_scaffold_22_prodigal-single.1__X__X__00256
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-67
Domain cluster:
rep: gwa1_scaffold_1_prodigal-single.1__X__X__00366__D3-59
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3webA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 47.0 | 3.68e-01 | 77.8% | 59.8% |
| 7whfC01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 51.0 | 4.36e-01 | 100.0% | 98.0% |
| 7c2gG01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 50.0 | 4.50e-01 | 100.0% | 97.7% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.56 | 51.0 | 4.40e-01 | 100.0% | 67.0% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.55 | 37.0 | 4.00e-01 | 74.6% | 86.0% |
| 3aqfB00 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.54 | 37.0 | 3.30e-01 | 71.4% | 89.7% |
| 1mbyA00 | 2.40.50.930 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 29.0 | 2.78e-01 | 77.8% | 40.0% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 46.0 | 4.22e-01 | 98.4% | 98.8% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 41.0 | 3.61e-01 | 90.5% | 78.2% |
| 1whoA00 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.52 | 45.0 | 4.02e-01 | 100.0% | 68.1% |
| 4jcmA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.78e-01 | 100.0% | 75.0% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.50 | 37.0 | 2.79e-01 | 100.0% | 29.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050044 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.67 | 52.0 | 4.41e-01 | 82.5% | 90.0% |
| 3401480 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.63 | 47.0 | 4.55e-01 | 87.3% | 71.4% |
| 3249433 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.62 | 42.0 | 3.78e-01 | 71.4% | 51.8% |
| 4932340 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.61 | 41.0 | 3.92e-01 | 73.0% | 58.7% |
| 4944478 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.61 | 50.0 | 4.05e-01 | 90.5% | 90.0% |
| 5059758 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 47.0 | 4.29e-01 | 100.0% | 65.9% |
| 4951669 | 1167.1.1.0 ↗ | 0.56 | 40.0 | 3.65e-01 | 76.2% | 63.5% | |
| 4981846 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 47.0 | 4.14e-01 | 100.0% | 95.0% |
| 4500949 | 1.1.5.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF26339 | 0.54 | 47.0 | 4.48e-01 | 100.0% | 86.7% |
| 5050093 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.54 | 47.0 | 4.24e-01 | 100.0% | 98.9% |
| 3523646 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.52 | 47.0 | 3.74e-01 | 100.0% | 71.2% |
| 4779324 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.52 | 41.0 | 3.61e-01 | 90.5% | 78.2% |
| 3385762 | 4951.1.1.0 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit | 0.52 | 43.0 | 4.10e-01 | 100.0% | 82.5% |
| 1889988 | 11.1.4.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › IglE_N | 0.52 | 44.0 | 3.82e-01 | 100.0% | 84.8% |
| 3660070 | 224.1.1.6 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › MPK1_gelsolin_C | 0.52 | 44.0 | 3.77e-01 | 96.8% | 96.2% |
| 4591471 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.52 | 27.0 | 2.91e-01 | 76.2% | 56.4% |
| 4112241 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 42.0 | 3.95e-01 | 100.0% | 77.6% |
| 4077437 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.51 | 42.0 | 3.58e-01 | 96.8% | 64.5% |