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gwe1_scaffold_79_prodigal-single.1__X__X__00083

Bact-Vir

gwe1_scaffold_79_prodigal-single.1__X__X__00083

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.74 52.0 4.64e-01 72.2% 58.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.73 51.0 4.15e-01 72.2% 57.6%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.69 48.0 4.43e-01 79.7% 57.1%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 51.0 3.68e-01 84.8% 88.1%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 50.0 3.65e-01 84.8% 89.6%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 45.0 2.71e-01 73.4% 11.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 42.0 3.71e-01 83.5% 48.2%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.63 49.0 3.63e-01 86.1% 91.8%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 42.0 3.93e-01 70.9% 94.1%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 48.0 3.56e-01 84.8% 89.0%
4fvmA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 49.0 3.51e-01 86.1% 48.7%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 44.0 3.73e-01 75.9% 89.9%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.61 43.0 3.72e-01 73.4% 62.6%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 54.0 4.19e-01 100.0% 48.0%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 42.0 3.54e-01 73.4% 97.1%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.60 40.0 3.70e-01 73.4% 50.9%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 52.0 3.39e-01 100.0% 74.8%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.59 34.0 4.09e-01 70.9% 93.8%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.59 53.0 4.17e-01 100.0% 55.6%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 46.0 3.39e-01 91.1% 89.1%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 42.0 3.65e-01 78.5% 60.2%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.92e-01 89.9% 33.0%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 48.0 4.21e-01 100.0% 71.9%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 40.0 3.41e-01 77.2% 89.4%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 42.0 3.01e-01 83.5% 28.7%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 35.0 4.09e-01 79.7% 100.0%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.00e-01 94.9% 31.9%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.54 48.0 4.00e-01 100.0% 75.5%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.54 47.0 2.78e-01 98.7% 25.1%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 47.0 3.09e-01 100.0% 76.5%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 46.0 4.14e-01 97.5% 100.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.97e-01 97.5% 79.7%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 46.0 4.09e-01 100.0% 99.2%
1u4cB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.12e-01 100.0% 55.8%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 46.0 2.95e-01 100.0% 55.2%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.10e-01 100.0% 59.4%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.52 40.0 4.16e-01 86.1% 93.0%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.69e-01 89.9% 96.7%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 41.0 3.19e-01 91.1% 78.7%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.85e-01 94.9% 28.6%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.68e-01 96.2% 76.9%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 45.0 3.81e-01 100.0% 75.9%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.25e-01 79.7% 60.6%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.42e-01 91.1% 90.1%
3a32A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 36.0 2.46e-01 77.2% 36.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3311258 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.76 50.0 3.96e-01 70.9% 33.8%
2466355 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.75 51.0 4.41e-01 70.9% 57.1%
3254588 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.74 49.0 3.10e-01 72.2% 14.5%
4142339 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.73 50.0 4.09e-01 70.9% 42.1%
3738128 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.72 48.0 3.57e-01 72.2% 28.4%
3824851 5084.5.1.43 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF30985 0.70 50.0 3.88e-01 73.4% 52.1%
3441483 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.69 51.0 3.26e-01 79.7% 17.3%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.67 45.0 4.28e-01 70.9% 60.0%
4643038 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.67 47.0 2.82e-01 73.4% 11.7%
3381541 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 46.0 3.23e-01 79.7% 22.8%
3180246 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.67 46.0 3.41e-01 72.2% 81.3%
185760 292.2.1.2 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB1 0.66 47.0 4.09e-01 88.6% 48.7%
3734398 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.65 45.0 3.11e-01 72.2% 70.9%
4059717 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 45.0 4.44e-01 72.2% 76.5%
3699859 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 44.0 3.60e-01 72.2% 69.0%
3925418 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 44.0 3.30e-01 72.2% 61.0%
3954450 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.64 56.0 3.65e-01 100.0% 58.7%
3837783 3291.1.1.50 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 0.63 44.0 3.92e-01 70.9% 65.5%
4234511 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.63 55.0 4.20e-01 96.2% 76.2%
3691310 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.63 46.0 3.93e-01 77.2% 72.0%
3741195 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.62 48.0 3.90e-01 82.3% 75.2%
3458523 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.62 41.0 3.65e-01 82.3% 47.0%
4098598 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.62 45.0 2.71e-01 75.9% 15.5%
3639350 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.61 48.0 3.92e-01 82.3% 69.6%
3283411 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.61 42.0 3.79e-01 70.9% 52.7%
3988064 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 39.0 4.15e-01 77.2% 74.3%
3826594 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.60 50.0 3.33e-01 88.6% 30.3%
3965860 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.59 52.0 4.85e-01 100.0% 91.0%
3931298 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 40.0 3.49e-01 70.9% 49.6%
3164479 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.59 52.0 4.93e-01 100.0% 95.8%
4417314 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.58 46.0 2.79e-01 86.1% 23.2%
3716329 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 51.0 3.93e-01 96.2% 72.7%
4174253 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.57 44.0 2.74e-01 87.3% 22.7%
5076536 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.56 49.0 3.30e-01 100.0% 81.5%
4514020 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.56 50.0 3.02e-01 100.0% 85.5%
5056218 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 42.0 4.45e-01 84.8% 91.4%
3740896 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.54 49.0 3.28e-01 100.0% 58.7%
3653276 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.54 45.0 3.86e-01 93.7% 83.0%
3603190 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 2.83e-01 100.0% 40.0%
3832962 5.1.3.155 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2 0.53 42.0 2.87e-01 88.6% 24.7%
5043415 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 47.0 4.11e-01 100.0% 70.0%
4947372 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 45.0 4.08e-01 98.7% 70.9%
3190697 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.52 45.0 3.31e-01 98.7% 62.7%
3724738 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.52 39.0 2.70e-01 83.5% 91.7%
3572222 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.52 46.0 2.97e-01 100.0% 48.9%
2632533 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.52 38.0 3.99e-01 96.2% 88.4%
3920715 2004.1.1.674 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B 0.51 45.0 2.77e-01 100.0% 83.7%
3684135 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 40.0 2.70e-01 87.3% 31.2%
3786837 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.51 40.0 2.49e-01 86.1% 18.2%
3688114 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.50 45.0 2.75e-01 100.0% 34.3%