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gwe1_scaffold_79_prodigal-single.1__X__X__00113
Bact-Virgwe1_scaffold_79_prodigal-single.1__X__X__00113
Identity
- Kingdom:
- phage
Quality
95.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-83
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.66 | 44.0 | 4.52e-01 | 88.9% | 71.4% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.65 | 45.0 | 4.84e-01 | 100.0% | 86.6% |
| 3tl4X01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.64 | 41.0 | 3.65e-01 | 90.1% | 45.6% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 52.0 | 3.60e-01 | 100.0% | 36.8% |
| 5hn9C00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 51.0 | 3.44e-01 | 100.0% | 35.6% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 43.0 | 4.32e-01 | 82.7% | 77.8% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 37.0 | 3.61e-01 | 97.5% | 58.2% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 49.0 | 4.33e-01 | 95.1% | 87.3% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 48.0 | 3.95e-01 | 92.6% | 60.1% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.56 | 38.0 | 3.49e-01 | 70.4% | 100.0% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.56 | 38.0 | 3.26e-01 | 70.4% | 44.0% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 45.0 | 4.62e-01 | 95.1% | 93.7% |
| 2wzfA03 | 1.20.120.990 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Glycosyltransferase family 88, C-terminal domain | 0.54 | 41.0 | 3.62e-01 | 82.7% | 63.7% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.54 | 46.0 | 3.50e-01 | 100.0% | 90.6% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 47.0 | 3.24e-01 | 100.0% | 52.7% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 44.0 | 3.46e-01 | 97.5% | 77.5% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.51 | 41.0 | 3.41e-01 | 86.4% | 91.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3806242 | 103.1.1.56 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_DHX29 | 0.76 | 48.0 | 5.04e-01 | 98.8% | 69.3% |
| 4032498 | 102.1.1.138 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_RecD2 | 0.69 | 46.0 | 5.26e-01 | 98.8% | 93.3% |
| 4241236 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.68 | 47.0 | 4.73e-01 | 84.0% | 71.2% |
| 3760771 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 44.0 | 4.39e-01 | 90.1% | 64.7% |
| 4983683 | 604.12.1.140 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF447_C | 0.61 | 38.0 | 4.27e-01 | 93.8% | 80.0% |
| 4941012 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.60 | 53.0 | 3.25e-01 | 98.8% | 21.2% |
| 3676971 | 143.1.1.3 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › MLLE_2 | 0.59 | 38.0 | 4.19e-01 | 87.7% | 83.1% |
| 3681508 | 3922.1.1.194 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SPX | 0.54 | 36.0 | 3.43e-01 | 70.4% | 80.0% |
| 5007487 | 164.1.1.33 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › DUF2391 | 0.54 | 43.0 | 3.81e-01 | 90.1% | 73.4% |
| 3573038 | 4207.1.1.99 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF28139 | 0.53 | 35.0 | 3.46e-01 | 71.6% | 61.1% |
| 4508874 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.53 | 42.0 | 4.00e-01 | 87.7% | 88.4% |
| 4075542 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 44.0 | 3.86e-01 | 96.3% | 80.0% |
| 3411768 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.51 | 42.0 | 3.99e-01 | 88.9% | 82.1% |
| 4032834 | 604.5.1.69 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF28025 | 0.50 | 42.0 | 3.36e-01 | 92.6% | 54.5% |