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gwe1_scaffold_79_prodigal-single.1__X__X__00116

Bact-Vir

gwe1_scaffold_79_prodigal-single.1__X__X__00116

Identity

Kingdom:
phage

Quality

47.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 159-214
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kdoA02 1.10.10.900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › SBDS protein C-terminal domain, subdomain 1 0.58 36.0 3.33e-01 87.5% 47.9%
4l00A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 46.0 3.40e-01 100.0% 86.2%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.60e-01 96.4% 35.1%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 39.0 3.97e-01 87.5% 96.4%
3kzxA02 1.10.150.730 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.50 33.0 3.26e-01 94.6% 61.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3679054 601.1.1.40 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › PGG 0.62 45.0 3.39e-01 85.7% 31.4%
4043237 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.60 48.0 3.60e-01 91.1% 94.7%
3897920 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 46.0 4.02e-01 87.5% 70.0%
4977219 109.2.1.20 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_125 0.54 43.0 2.81e-01 98.2% 20.6%