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gwe1_scaffold_79_prodigal-single.1__X__X__00172

Bact-Vir

gwe1_scaffold_79_prodigal-single.1__X__X__00172

Identity

Kingdom:
phage

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-87
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.14e-01 100.0% 72.4%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 4.46e-01 98.8% 67.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.97e-01 100.0% 80.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.83e-01 100.0% 80.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.78e-01 98.8% 87.3%
3c8mA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 44.0 3.65e-01 81.5% 72.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.31e-01 100.0% 88.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 44.0 3.48e-01 88.9% 70.9%
3irbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 33.0 3.56e-01 85.2% 73.5%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 43.0 3.74e-01 90.1% 81.9%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 45.0 3.76e-01 100.0% 53.8%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 3.51e-01 86.4% 79.7%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 41.0 3.27e-01 96.3% 87.7%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.96e-01 93.8% 96.9%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.50 41.0 3.47e-01 90.1% 70.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 48.0 5.27e-01 97.5% 73.8%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 50.0 5.36e-01 100.0% 80.9%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 45.0 4.38e-01 100.0% 54.4%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.73 46.0 4.24e-01 100.0% 49.5%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 47.0 4.61e-01 100.0% 61.1%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.69 46.0 4.91e-01 100.0% 78.6%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.69 47.0 4.81e-01 100.0% 72.5%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 46.0 4.32e-01 100.0% 56.0%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.68 47.0 4.35e-01 100.0% 58.0%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 44.0 3.41e-01 100.0% 31.7%
3498558 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.64 46.0 3.75e-01 100.0% 41.3%
3816395 1.1.11.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.63 54.0 4.40e-01 95.1% 96.1%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.63 45.0 4.30e-01 100.0% 64.2%
3254941 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.59 44.0 3.78e-01 100.0% 49.2%
3738161 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.58 43.0 3.77e-01 100.0% 51.2%
3485761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 51.0 3.89e-01 100.0% 45.6%
3218545 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 48.0 4.78e-01 100.0% 91.8%
4314610 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.55 45.0 3.51e-01 91.4% 56.0%
4088630 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.53 42.0 3.20e-01 88.9% 83.3%
3889661 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.88e-01 76.5% 97.5%
4600928 4272.1.1.0 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like 0.52 42.0 3.38e-01 90.1% 61.2%
4201236 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.52 43.0 3.46e-01 92.6% 61.8%
1879301 3698.1.1.0 ↗ beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain 0.52 38.0 3.00e-01 79.0% 55.1%
3716895 3698.1.1.0 ↗ beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain 0.52 37.0 2.91e-01 77.8% 51.6%
3597347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 46.0 4.04e-01 100.0% 66.7%
4063452 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 42.0 3.82e-01 88.9% 98.2%
4215842 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.50 43.0 3.27e-01 95.1% 40.5%