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gwe1_scaffold_79_prodigal-single.1__X__X__00190

Bact-Vir

gwe1_scaffold_79_prodigal-single.1__X__X__00190

Identity

Kingdom:
phage

Quality

90.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-99
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 42.0 4.05e-01 100.0% 55.9%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 43.0 4.07e-01 95.6% 54.0%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.65 52.0 5.54e-01 100.0% 98.7%
3axsA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.62 39.0 4.49e-01 73.6% 89.2%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.79e-01 86.8% 94.4%
5g4iB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 48.0 4.06e-01 89.0% 50.0%
3pjxA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 49.0 3.94e-01 90.1% 78.5%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 47.0 4.66e-01 86.8% 83.7%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.81e-01 87.9% 92.7%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 52.0 4.61e-01 100.0% 94.8%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 46.0 4.37e-01 86.8% 76.1%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 50.0 4.50e-01 97.8% 82.4%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 4.12e-01 84.6% 89.6%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 45.0 4.45e-01 87.9% 99.0%
3fkdA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 42.0 4.00e-01 89.0% 65.2%
2f68X02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.84e-01 90.1% 87.0%
1y1uA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 37.0 3.77e-01 95.6% 70.1%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.56 45.0 4.60e-01 87.9% 96.6%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.55 44.0 4.08e-01 87.9% 87.5%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 4.34e-01 83.5% 94.6%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 43.0 4.08e-01 86.8% 76.1%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.21e-01 87.9% 89.3%
3m8uA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.55 43.0 3.61e-01 87.9% 73.4%
4py9A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 44.0 3.96e-01 87.9% 76.2%
1c4kA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 44.0 3.60e-01 90.1% 71.1%
1zu0A02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.54 43.0 4.12e-01 87.9% 97.2%
3n75A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 43.0 3.57e-01 87.9% 64.7%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 46.0 4.06e-01 100.0% 87.5%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 4.29e-01 85.7% 96.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.53 42.0 4.23e-01 87.9% 86.2%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.52 41.0 3.10e-01 86.8% 73.2%
2nn6G03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 35.0 3.54e-01 76.9% 71.6%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.50 41.0 3.61e-01 96.7% 59.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291691 4340.1.1.0 a+b complex topology › TFB5-related › TFB5-related › TFB5-related 0.74 41.0 5.35e-01 71.4% 100.0%
3989273 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.70 46.0 4.31e-01 87.9% 53.9%
3950768 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 47.0 5.37e-01 89.0% 98.5%
3954581 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.68 46.0 5.25e-01 86.8% 96.9%
5049293 3116.1.1.0 a+b two layers › Probable 30S ribosomal protein PSRP-3 › Probable 30S ribosomal protein PSRP-3 › Probable 30S ribosomal protein PSRP-3 0.66 57.0 5.69e-01 96.7% 98.9%
5028902 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.66 49.0 5.27e-01 89.0% 94.7%
5048601 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.65 52.0 5.12e-01 100.0% 78.8%
4567570 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.64 44.0 4.56e-01 83.5% 75.3%
4235667 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.64 42.0 4.36e-01 82.4% 71.8%
3958718 304.155.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in putative transcriptional regulator Jann_0659-related proteins › Ferredoxin-like domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_M 0.64 43.0 4.55e-01 84.6% 78.8%
3839021 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.63 50.0 5.01e-01 84.6% 83.2%
4122240 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.63 50.0 5.00e-01 84.6% 86.2%
1150630 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.63 41.0 3.73e-01 91.2% 48.4%
1138120 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.63 47.0 4.66e-01 87.9% 76.6%
4663993 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.62 43.0 4.42e-01 85.7% 75.3%
4002398 220.1.1.94 beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.62 42.0 3.48e-01 89.0% 38.8%
4940092 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.62 47.0 5.02e-01 89.0% 93.8%
5043432 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.62 42.0 4.23e-01 82.4% 70.0%
4392066 306.6.1.2 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › FlgI 0.62 45.0 4.88e-01 87.9% 94.7%
4487906 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.62 41.0 4.21e-01 82.4% 70.0%
3386059 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.62 46.0 3.34e-01 89.0% 28.2%
4965997 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 49.0 4.95e-01 87.9% 91.1%
4939655 4099.1.1.53 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF1828 0.61 49.0 4.50e-01 87.9% 71.7%
4971803 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.61 41.0 4.39e-01 84.6% 80.0%
4987705 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 47.0 4.95e-01 89.0% 95.0%
5004199 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.61 41.0 4.10e-01 83.5% 66.3%
4952238 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.60 41.0 4.27e-01 90.1% 75.3%
4958759 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.60 48.0 5.06e-01 87.9% 97.5%
3786773 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.60 41.0 3.63e-01 87.9% 48.5%
5066573 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.60 41.0 4.23e-01 83.5% 74.1%
5022748 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.60 43.0 4.37e-01 84.6% 75.6%
5042104 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.60 47.0 4.98e-01 89.0% 96.2%
4137321 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.60 41.0 4.20e-01 84.6% 74.1%
5042208 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.60 41.0 4.19e-01 85.7% 72.2%
4947559 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.60 41.0 4.12e-01 83.5% 70.0%
4992482 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.60 46.0 4.76e-01 89.0% 89.4%
3279042 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.60 49.0 4.62e-01 91.2% 78.2%
4402584 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 41.0 4.32e-01 85.7% 81.2%
3805185 4959.1.1.0 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.59 48.0 4.88e-01 89.0% 97.8%
3631465 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.59 42.0 4.58e-01 89.0% 94.5%
5033817 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.59 46.0 4.90e-01 87.9% 97.5%
4058430 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 40.0 4.59e-01 86.8% 100.0%
2565004 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 40.0 3.98e-01 72.5% 67.4%
4276027 306.6.1.2 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › FlgI 0.58 46.0 4.83e-01 87.9% 97.5%
4398169 306.2.1.2 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › FlgI 0.58 45.0 4.78e-01 87.9% 96.2%
3641430 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 45.0 3.91e-01 87.9% 52.7%
4641170 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 40.0 4.04e-01 85.7% 72.2%
5031084 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.57 39.0 4.20e-01 84.6% 84.0%
4929401 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 40.0 4.24e-01 86.8% 83.7%
5007807 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.57 44.0 4.38e-01 85.7% 80.0%
3516510 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.56 44.0 4.12e-01 87.9% 97.5%
3208110 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 39.0 3.65e-01 87.9% 58.3%
3503102 216.1.1.10 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.55 39.0 3.65e-01 92.3% 58.3%
3177293 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.55 45.0 4.09e-01 90.1% 68.8%
3249139 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.55 45.0 4.20e-01 93.4% 90.8%
4996318 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 42.0 4.04e-01 87.9% 70.9%
4467662 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 37.0 4.04e-01 89.0% 94.3%
4945430 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.80e-01 87.9% 74.7%
2161921 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 38.0 3.94e-01 80.2% 100.0%
5011312 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.52 41.0 3.22e-01 87.9% 67.3%