Back to structures

gwe1_scaffold_79_prodigal-single.1__X__X__00198

Bact-Vir

gwe1_scaffold_79_prodigal-single.1__X__X__00198

Identity

Kingdom:
phage

Quality

87.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-88
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 55.0 4.59e-01 82.6% 40.1%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 53.0 4.62e-01 82.6% 45.2%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 53.0 5.12e-01 82.6% 59.2%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 52.0 4.43e-01 82.6% 41.9%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 53.0 4.29e-01 83.7% 38.7%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 51.0 4.33e-01 82.6% 42.5%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 51.0 4.77e-01 75.6% 55.3%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 51.0 4.27e-01 83.7% 41.1%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 50.0 4.23e-01 82.6% 41.6%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 50.0 4.24e-01 82.6% 41.6%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 4.88e-01 86.0% 51.2%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 5.15e-01 82.6% 62.1%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.88e-01 82.6% 61.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.08e-01 82.6% 67.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.07e-01 82.6% 71.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.83e-01 82.6% 63.1%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.01e-01 80.2% 76.2%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 41.0 4.91e-01 73.3% 89.5%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.59e-01 82.6% 58.8%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.47e-01 80.2% 58.3%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.74e-01 82.6% 72.2%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.64 49.0 3.39e-01 81.4% 49.1%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.25e-01 81.4% 58.3%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.23e-01 81.4% 56.7%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.53e-01 94.2% 70.6%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 4.21e-01 79.1% 72.3%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.65e-01 93.0% 77.4%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 3.90e-01 82.6% 62.5%
2ptqA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 44.0 3.06e-01 79.1% 83.8%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.66e-01 80.2% 63.6%
4griA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.53 42.0 3.73e-01 84.9% 87.0%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.52 34.0 3.58e-01 84.9% 73.4%
3l7oA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 32.0 3.44e-01 79.1% 73.6%
4lecA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.80e-01 74.4% 82.7%
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.51 36.0 3.21e-01 100.0% 51.2%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3734764 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.83 45.0 2.97e-01 76.7% 14.5%
3802667 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.82 52.0 4.80e-01 73.3% 52.4%
5043775 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 55.0 4.63e-01 83.7% 44.3%
5048466 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 50.0 4.19e-01 79.1% 40.0%
5016748 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.78 49.0 4.36e-01 77.9% 45.8%
5030289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 50.0 5.18e-01 76.7% 70.0%
4994432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.05e-01 82.6% 59.0%
4978826 873.1.1.18 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 0.77 50.0 3.66e-01 79.1% 26.5%
None 0.76 47.0 4.21e-01 76.7% 46.1%
3467443 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.76 54.0 4.84e-01 84.9% 54.8%
4947062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 5.21e-01 82.6% 66.3%
4938741 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 54.0 4.56e-01 82.6% 45.7%
5041543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.75 50.0 4.17e-01 80.2% 41.4%
3656554 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.75 46.0 3.90e-01 100.0% 39.3%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 51.0 5.15e-01 82.6% 70.6%
5052844 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 52.0 3.84e-01 89.5% 29.8%
5018390 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 48.0 4.34e-01 79.1% 47.9%
5059914 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 4.91e-01 82.6% 62.0%
4980650 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 5.22e-01 93.0% 65.7%
4947850 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 5.18e-01 80.2% 66.7%
3831199 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 4.69e-01 87.2% 58.1%
5036586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 5.20e-01 82.6% 74.1%
4983914 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 48.0 4.98e-01 82.6% 72.5%
3941591 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 48.0 4.92e-01 79.1% 70.6%
4928753 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 5.46e-01 83.7% 78.9%
3269500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 4.95e-01 82.6% 65.7%
3586609 101.1.2.278 alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.71 46.0 4.08e-01 75.6% 47.1%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.71 52.0 3.45e-01 84.9% 21.0%
3625937 101.1.2.216 alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.70 53.0 4.35e-01 82.6% 45.3%
3821254 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.70 52.0 4.59e-01 82.6% 53.6%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 4.70e-01 83.7% 60.7%
3661331 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 54.0 4.31e-01 83.7% 41.8%
4999601 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 4.53e-01 82.6% 59.0%
5062639 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.70 56.0 5.39e-01 86.0% 75.8%
4928997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 5.17e-01 79.1% 75.6%
3285760 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 55.0 4.24e-01 83.7% 53.9%
3713148 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 4.69e-01 83.7% 65.3%
3443063 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 53.0 4.18e-01 82.6% 41.7%
3963083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 4.63e-01 83.7% 68.9%
5057571 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.69 51.0 5.03e-01 90.7% 74.4%
5075771 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 51.0 4.69e-01 82.6% 60.9%
5003874 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 51.0 4.56e-01 82.6% 56.7%
4948099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.75e-01 81.4% 62.7%
3278037 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 51.0 3.87e-01 81.4% 35.4%
3579786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 4.84e-01 81.4% 70.4%
5059468 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.66 48.0 4.86e-01 84.9% 77.6%
5046134 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 3.91e-01 82.6% 43.4%
3953587 2008.1.1.168 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 0.66 50.0 4.78e-01 90.7% 70.0%
4308205 101.1.2.767 alpha arrays › HTH › HTH › winged helix domain › PF27612 0.66 44.0 3.98e-01 86.0% 50.0%
4950787 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.66 50.0 4.82e-01 90.7% 72.6%
3434805 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.65 50.0 4.74e-01 82.6% 69.5%
3519677 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.65 50.0 4.27e-01 82.6% 59.3%
5065786 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 48.0 4.29e-01 82.6% 55.8%
5050129 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 49.0 4.52e-01 82.6% 62.7%
3647004 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.65 53.0 4.61e-01 88.4% 61.5%
3422463 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.64 48.0 4.56e-01 80.2% 68.6%
4655417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.39e-01 80.2% 78.3%
2609 101.1.2.38 alpha arrays › HTH › HTH › winged helix domain › RTP 0.63 47.0 4.23e-01 81.4% 56.7%
4990676 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 48.0 4.39e-01 82.6% 62.7%
3701433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.18e-01 81.4% 72.5%
4025929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.27e-01 82.6% 64.3%
3744355 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.61 43.0 3.82e-01 82.6% 50.4%
4965874 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 50.0 4.28e-01 88.4% 69.4%
3655482 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 50.0 3.93e-01 90.7% 45.0%
5079193 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.42e-01 91.9% 70.0%
4004118 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 48.0 3.71e-01 88.4% 81.6%
3168799 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.58 44.0 3.60e-01 82.6% 47.9%
5053363 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.79e-01 83.7% 51.4%
4969948 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.33e-01 88.4% 71.4%
4932791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.91e-01 84.9% 80.8%
3993843 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.56 41.0 4.30e-01 79.1% 90.7%
4940432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.65e-01 95.3% 65.6%
4934569 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 47.0 3.99e-01 100.0% 84.1%
5057183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 33.0 3.24e-01 79.1% 60.0%
3413847 109.4.1.1289 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 0.50 37.0 2.22e-01 80.2% 23.0%
D2 high residues 117-245
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13814.13 best Replic_Relax 36.8 6.00e-09 62.0% 26.3%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p4gA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 39.0 3.88e-01 82.9% 52.5%
2ewfA03 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.68 63.0 5.16e-01 100.0% 74.2%
1cfrA00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.66 60.0 4.65e-01 100.0% 68.2%
1wteA02 3.40.1560.10 Alpha Beta › 3-Layer(aba) Sandwich › type ii restriction endonuclease, domain 2 › type ii restriction endonuclease, domain 2 0.64 57.0 5.86e-01 97.7% 99.2%
3dfuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 43.0 4.40e-01 100.0% 70.5%
3azoA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 53.0 4.13e-01 99.2% 96.5%
2w61A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 54.0 4.04e-01 100.0% 62.9%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.59 41.0 3.52e-01 80.6% 44.2%
3hutA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 42.0 3.69e-01 79.8% 88.8%
4wqmA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 38.0 3.82e-01 84.5% 67.7%
1usgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 42.0 3.63e-01 79.1% 87.1%
5jd5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.76e-01 99.2% 78.9%
3ll3B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 40.0 3.27e-01 74.4% 88.2%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 48.0 3.70e-01 97.7% 86.0%
3c5cB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 4.21e-01 92.2% 69.5%
2wtmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.79e-01 93.8% 95.6%
4yi7A02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.55 42.0 3.37e-01 81.4% 83.8%
1zemA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 48.0 3.90e-01 99.2% 88.5%
3ucxA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 49.0 3.93e-01 100.0% 88.8%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 41.0 4.20e-01 95.3% 81.1%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.54 43.0 3.83e-01 86.0% 59.2%
3pf8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.92e-01 99.2% 96.4%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 49.0 3.91e-01 100.0% 75.3%
4bqhA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 47.0 3.12e-01 94.6% 33.6%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 38.0 3.76e-01 72.1% 98.5%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 41.0 3.23e-01 85.3% 38.2%
2b3yA01 3.30.499.10 Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 0.53 40.0 3.23e-01 77.5% 79.5%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 45.0 3.14e-01 100.0% 28.0%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.67e-01 97.7% 98.2%
4lvuA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 3.83e-01 100.0% 84.9%
4yacA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 3.91e-01 99.2% 86.0%
2egzC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 47.0 3.96e-01 100.0% 92.7%
3ty4B00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 41.0 3.07e-01 86.8% 44.8%
2o7sA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 47.0 3.86e-01 100.0% 71.7%
4kv7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 3.45e-01 82.9% 93.4%
2yhaA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 47.0 3.87e-01 100.0% 69.9%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 46.0 3.72e-01 100.0% 75.5%
2cjpA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.43e-01 99.2% 98.8%
4m88A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.34e-01 80.6% 89.2%
3rkrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.84e-01 100.0% 87.8%
5bu6A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.51 46.0 3.64e-01 100.0% 78.0%
3b5iB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.58e-01 95.3% 96.3%
1yb1B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 45.0 3.71e-01 99.2% 84.7%
4iscA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.96e-01 95.3% 75.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 50.0 5.19e-01 96.1% 75.0%
4152187 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 52.0 5.49e-01 100.0% 83.5%
4964811 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 51.0 4.04e-01 80.6% 38.2%
4494448 2008.1.1.183 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27227 0.67 48.0 4.73e-01 100.0% 69.6%
5080739 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 47.0 3.87e-01 96.1% 40.9%
4676615 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.65 56.0 4.33e-01 92.2% 57.8%
4955559 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 49.0 5.04e-01 88.4% 90.0%
3736568 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 53.0 4.97e-01 91.5% 88.4%
5049100 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 52.0 4.66e-01 89.9% 67.8%
None 0.62 56.0 4.90e-01 100.0% 75.4%
4956059 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 49.0 4.49e-01 87.6% 65.5%
4944782 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 52.0 4.99e-01 100.0% 79.3%
3263349 2003.1.1.70 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N_2 0.61 42.0 3.64e-01 87.6% 45.6%
3593536 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 49.0 4.42e-01 84.5% 83.4%
3248904 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.61 42.0 3.62e-01 87.6% 45.6%
3645791 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 46.0 4.82e-01 79.1% 90.0%
3922298 2496.1.1.6 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO_2 0.61 48.0 4.45e-01 86.0% 78.8%
5054545 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 45.0 4.72e-01 100.0% 87.4%
5015516 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 44.0 4.37e-01 94.6% 74.8%
4944688 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.59 50.0 3.88e-01 92.2% 91.9%
4969308 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 42.0 4.48e-01 75.2% 97.4%
4634374 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.58 41.0 4.26e-01 72.1% 99.2%
3689992 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.32e-01 80.6% 33.9%
3707620 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 44.0 3.83e-01 90.7% 53.7%
3960390 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.57 41.0 3.91e-01 87.6% 63.3%
4409039 2008.1.1.207 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_7 0.57 51.0 4.30e-01 100.0% 66.4%
3609199 2003.1.5.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.56 41.0 2.80e-01 76.7% 26.7%
3272325 2003.1.5.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.56 47.0 3.77e-01 89.9% 52.0%
3393174 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 31.0 3.34e-01 80.6% 60.9%
5063190 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.56 42.0 3.51e-01 79.8% 51.7%
3786266 2004.1.1.495 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.56 47.0 4.16e-01 90.7% 73.5%
4969052 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.36e-01 86.8% 55.9%
4608801 2002.1.1.272 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31089 0.55 49.0 3.78e-01 100.0% 70.0%
5050211 7579.1.1.42 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.55 48.0 3.84e-01 99.2% 97.5%
3343443 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.54 49.0 3.49e-01 100.0% 52.7%
3433514 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.54 44.0 3.16e-01 86.0% 30.5%
3273076 213.1.1.2 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.54 38.0 3.62e-01 72.1% 98.7%
4026015 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.54 40.0 3.79e-01 86.0% 63.1%
3271658 2003.1.1.331 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Methyltransf_12 0.54 49.0 3.33e-01 100.0% 35.2%
3689053 2484.1.1.39 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.54 45.0 4.28e-01 89.1% 91.3%
None 0.54 45.0 3.67e-01 89.9% 50.0%
3191387 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 48.0 3.61e-01 100.0% 86.6%
3595447 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 48.0 3.52e-01 100.0% 72.5%
3179508 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 48.0 3.41e-01 100.0% 83.1%
5071387 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 46.0 4.53e-01 99.2% 89.6%
3744283 2003.1.1.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored 0.52 46.0 4.14e-01 100.0% 70.3%
4653216 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.52 40.0 3.57e-01 87.6% 56.4%
3585990 2484.1.1.32 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.52 44.0 3.60e-01 93.8% 90.8%
5075820 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.52 45.0 4.07e-01 93.0% 95.3%
3231932 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 4.10e-01 87.6% 86.9%
4512918 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.51 47.0 3.40e-01 100.0% 53.9%
3718987 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 47.0 4.08e-01 100.0% 75.9%
3674809 2484.1.1.32 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.51 44.0 3.56e-01 96.1% 86.4%
4021476 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 42.0 3.55e-01 90.7% 53.5%
5051577 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.50 33.0 2.96e-01 89.1% 44.9%