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gwe1_scaffold_7_prodigal-single.1__X__X__00046

Bact-Vir

gwe1_scaffold_7_prodigal-single.1__X__X__00046

Identity

Kingdom:
phage

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-113
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 37.0 3.55e-01 100.0% 62.5%
2gj8D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 32.0 2.78e-01 100.0% 39.5%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 34.0 3.46e-01 99.1% 67.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991400 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 41.0 3.44e-01 100.0% 42.1%
4002114 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 29.0 3.62e-01 94.7% 95.0%
D2 medium residues 114-208
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 44.0 4.69e-01 76.8% 71.6%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 42.0 4.35e-01 87.4% 84.3%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 35.0 3.77e-01 89.5% 77.9%
3spcA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 40.0 3.65e-01 77.9% 81.1%
1gwiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 42.0 2.81e-01 85.3% 28.1%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.54 40.0 3.94e-01 96.8% 72.6%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 45.0 3.19e-01 94.7% 86.3%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 38.0 3.81e-01 100.0% 73.5%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.52 39.0 3.50e-01 100.0% 55.3%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 39.0 3.20e-01 95.8% 43.0%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 42.0 4.19e-01 92.6% 86.1%
3rrwB01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.51 38.0 3.06e-01 76.8% 50.0%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 39.0 3.00e-01 85.3% 49.4%
1f0lA02 1.10.490.40 Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain 0.51 41.0 3.38e-01 87.4% 57.1%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 42.0 4.16e-01 92.6% 93.0%
5k97A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 35.0 3.92e-01 81.1% 100.0%
5hmlA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 36.0 3.89e-01 78.9% 91.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3722472 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.61 36.0 2.98e-01 83.2% 34.4%
1687153 3962.2.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › Helical domain in type ISP restriction-modification enzymes › Helical domain in type ISP restriction-modification enzymes › ISP_coupler 0.58 51.0 4.43e-01 97.9% 67.1%
4986198 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 42.0 4.27e-01 93.7% 83.3%
3815501 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.56 44.0 4.46e-01 97.9% 86.3%
216794 304.58.1.0 ↗ a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.56 40.0 3.00e-01 75.8% 79.4%
3697157 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.55 44.0 4.38e-01 93.7% 85.0%
4975020 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.54 42.0 3.81e-01 85.3% 73.3%
3883769 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.54 41.0 3.47e-01 96.8% 48.1%
3229203 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.53 40.0 2.58e-01 80.0% 24.6%
3660638 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 37.0 2.46e-01 75.8% 21.5%
4470939 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.52 46.0 3.71e-01 97.9% 94.4%
3908854 2484.1.1.215 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.51 38.0 2.49e-01 96.8% 16.6%
3652773 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 36.0 2.82e-01 76.8% 69.4%