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gwe1_scaffold_7_prodigal-single.1__X__X__00084

Bact-Vir

gwe1_scaffold_7_prodigal-single.1__X__X__00084

Identity

Kingdom:
phage

Quality

51.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 165-277_293-348
PDB
D2 medium residues 515-601
PDB
Domain cluster: rep: IMGVR_UViG_3300003604_000018-3300003604-JGI26464J51801_10016209__D29-123
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.75 67.0 5.66e-01 100.0% 89.7%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.61 30.0 3.11e-01 92.0% 48.2%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.60 32.0 3.73e-01 87.4% 73.0%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.29e-01 87.4% 98.9%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 4.03e-01 79.3% 96.6%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.26e-01 90.8% 100.0%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.52 46.0 3.76e-01 100.0% 66.5%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.52 45.0 3.38e-01 97.7% 70.2%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.52e-01 75.9% 81.9%
2enpA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 3.78e-01 100.0% 82.3%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 39.0 3.92e-01 83.9% 85.4%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 41.0 3.86e-01 90.8% 91.2%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.59e-01 77.0% 96.9%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.33e-01 97.7% 95.8%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.21e-01 97.7% 96.2%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.32e-01 97.7% 95.8%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.05e-01 92.0% 96.8%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.45e-01 98.9% 98.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.83 71.0 6.42e-01 92.0% 79.1%
1107991 4166.1.1.4 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › mtd_2nd 0.74 67.0 6.06e-01 100.0% 94.0%
3797626 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.63 32.0 3.90e-01 83.9% 77.8%
2770992 74.1.1.2 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.62 32.0 3.79e-01 85.1% 71.7%
2756321 74.1.1.1 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA_gamma_C 0.62 34.0 4.10e-01 87.4% 85.2%
3506789 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.61 49.0 3.86e-01 86.2% 72.0%
2541247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 27.0 3.79e-01 89.7% 100.0%
3995797 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.59 33.0 3.81e-01 85.1% 75.4%
3995211 74.1.1.2 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.57 30.0 3.55e-01 85.1% 77.8%
3344184 11.1.1.652 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.54 44.0 3.77e-01 89.7% 89.0%
4001680 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.66e-01 73.6% 70.5%
5036532 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.97e-01 94.3% 84.8%
D3 medium residues 602-724
PDB
D4 medium residues 1105-1179
PDB