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gwe1_scaffold_7_prodigal-single.1__X__X__00101

Bact-Vir

gwe1_scaffold_7_prodigal-single.1__X__X__00101

Identity

Kingdom:
phage

Quality

69.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-108
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 47.0 5.29e-01 72.8% 75.0%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.80 65.0 6.40e-01 88.9% 82.1%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 59.0 6.21e-01 87.7% 89.0%
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 56.0 5.86e-01 87.7% 82.4%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 57.0 6.29e-01 87.7% 98.4%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 57.0 5.84e-01 88.9% 81.0%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.76 61.0 6.14e-01 85.2% 97.6%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 39.0 4.37e-01 88.9% 66.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 37.0 4.45e-01 86.4% 77.4%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.69 55.0 5.54e-01 87.7% 85.4%
4tquS02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 46.0 5.09e-01 88.9% 89.1%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 47.0 5.09e-01 76.5% 86.6%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 59.0 5.52e-01 100.0% 78.8%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 55.0 4.43e-01 88.9% 57.4%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 54.0 5.25e-01 87.7% 84.3%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 5.06e-01 84.0% 81.0%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 54.0 4.52e-01 88.9% 56.4%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 54.0 4.65e-01 88.9% 67.2%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 52.0 4.49e-01 88.9% 55.7%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 53.0 4.84e-01 88.9% 72.5%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 46.0 4.42e-01 74.1% 89.1%
2khiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 5.00e-01 88.9% 77.9%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 5.23e-01 88.9% 87.8%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 43.0 4.58e-01 86.4% 81.7%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 5.33e-01 86.4% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 35.0 3.54e-01 88.9% 53.0%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 50.0 4.46e-01 88.9% 61.0%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.62 32.0 3.70e-01 95.1% 69.1%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 37.0 4.16e-01 74.1% 82.8%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 49.0 4.13e-01 88.9% 60.6%
3csqA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.58 43.0 3.46e-01 79.0% 84.1%
6tnyB02 2.40.50.430 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 46.0 4.17e-01 88.9% 66.1%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 4.34e-01 82.7% 91.0%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 37.0 4.13e-01 81.5% 89.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 26.0 3.38e-01 88.9% 77.3%
2c1lA02 2.40.330.30 Mainly Beta › Beta Barrel › At1g16640 B3 domain › 0.52 42.0 3.39e-01 90.1% 71.8%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 40.0 3.34e-01 88.9% 44.9%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 3.29e-01 77.8% 81.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4583050 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 58.0 6.18e-01 88.9% 84.3%
4948008 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 61.0 5.92e-01 88.9% 73.3%
3980538 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.78 65.0 6.72e-01 87.7% 94.7%
4197835 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.78 57.0 6.26e-01 88.9% 95.4%
4161829 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 57.0 5.92e-01 91.4% 82.7%
2720713 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.77 60.0 5.43e-01 88.9% 62.3%
340101 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 57.0 6.13e-01 88.9% 91.3%
5015458 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.77 48.0 4.84e-01 76.5% 63.7%
4088295 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 58.0 5.92e-01 88.9% 81.2%
4361731 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.76 56.0 6.18e-01 88.9% 96.9%
350 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.76 57.0 6.24e-01 88.9% 97.0%
1513775 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.75 48.0 5.10e-01 76.5% 73.6%
160497 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.74 48.0 5.10e-01 77.8% 74.6%
4067858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 59.0 6.28e-01 88.9% 97.1%
3700209 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 60.0 5.94e-01 88.9% 83.5%
4654307 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.73 58.0 6.24e-01 87.7% 97.1%
2768809 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.73 53.0 5.76e-01 88.9% 92.5%
4046344 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.73 58.0 6.17e-01 87.7% 97.1%
4928896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 60.0 5.37e-01 88.9% 84.5%
3715059 2.1.1.3 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.72 61.0 6.29e-01 91.4% 98.7%
4180660 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 48.0 4.23e-01 76.5% 48.7%
5026289 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.72 48.0 4.13e-01 76.5% 44.8%
1567587 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.72 46.0 4.89e-01 76.5% 74.6%
3597429 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 60.0 6.22e-01 91.4% 98.7%
4932534 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.70 54.0 5.60e-01 84.0% 89.3%
3591052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 53.0 5.82e-01 81.5% 100.0%
180091 2.1.1.55 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CusF_Ec 0.69 55.0 5.54e-01 87.7% 85.4%
4231997 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.69 54.0 5.00e-01 84.0% 67.0%
3965386 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.69 46.0 4.07e-01 76.5% 47.5%
421 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.69 48.0 4.98e-01 76.5% 76.6%
1075289 2.4.1.5 beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.69 44.0 4.89e-01 76.5% 82.8%
5035886 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.68 53.0 5.47e-01 84.0% 89.3%
4168836 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.68 52.0 5.57e-01 91.4% 95.7%
165768 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.67 54.0 5.12e-01 87.7% 78.1%
4497198 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 54.0 4.36e-01 87.7% 50.3%
5021763 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.66 51.0 5.30e-01 84.0% 89.3%
5037634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 53.0 5.29e-01 87.7% 88.2%
3393395 2.3.1.11 beta barrels › OB-fold › TIMP-like › TIMP-like › Vein_beta-barrel 0.65 52.0 4.52e-01 88.9% 78.5%
4969369 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 52.0 4.50e-01 86.4% 60.8%
5003654 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 51.0 5.31e-01 84.0% 92.0%
4888315 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 51.0 4.36e-01 85.2% 56.7%
3163776 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 47.0 3.95e-01 76.5% 46.9%
4966111 2.1.1.378 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26006 0.64 52.0 5.35e-01 87.7% 98.7%
1552408 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.64 53.0 4.89e-01 88.9% 73.1%
3891105 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.64e-01 86.4% 100.0%
3588305 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 5.21e-01 92.6% 94.4%
4680940 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.63 51.0 5.24e-01 88.9% 94.7%
5030948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 51.0 4.55e-01 88.9% 63.5%
3217247 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.90e-01 88.9% 78.9%
5060038 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.63 51.0 4.57e-01 88.9% 75.7%
4023320 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.41e-01 88.9% 59.2%
3707855 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.48e-01 88.9% 69.2%
4990168 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 45.0 4.91e-01 87.7% 93.8%
3216903 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 49.0 4.73e-01 88.9% 74.7%
4404580 2.1.1.26 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.62 54.0 5.48e-01 98.8% 100.0%
5071787 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 51.0 4.30e-01 88.9% 93.1%
4278259 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.61 51.0 4.41e-01 90.1% 93.6%
4944053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 5.07e-01 88.9% 96.0%
3517296 2.1.1.82 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.59 47.0 4.02e-01 87.7% 84.4%
3340753 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 45.0 4.51e-01 100.0% 78.8%
4045126 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.57 46.0 3.98e-01 90.1% 97.7%
4994830 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 42.0 3.83e-01 84.0% 98.3%
3369818 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.55 36.0 3.86e-01 82.7% 81.5%
5010824 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.55 45.0 4.09e-01 91.4% 99.1%
3496522 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.72e-01 88.9% 39.8%
3952159 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.53 39.0 4.00e-01 82.7% 84.0%
3591064 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 35.0 3.75e-01 90.1% 86.2%
5041307 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 3.17e-01 100.0% 97.3%
4862766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 31.0 3.21e-01 74.1% 64.9%
4521197 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 35.0 3.93e-01 72.8% 98.3%