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gwe1_scaffold_7_prodigal-single.1__X__X__00252
Bact-Virgwe1_scaffold_7_prodigal-single.1__X__X__00252
Identity
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
rep: S16_GE16_scaffold_10741_prodigal-single.1__X__X__00392__D3-52
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.75 | 65.0 | 5.50e-01 | 100.0% | 96.4% |
| 2mlbA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.75 | 64.0 | 5.53e-01 | 100.0% | 87.3% |
| 1zxhA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 57.0 | 5.59e-01 | 100.0% | 96.4% |
| 3u5eU00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 56.0 | 4.56e-01 | 100.0% | 93.0% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 56.0 | 4.60e-01 | 100.0% | 95.9% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 44.0 | 2.73e-01 | 79.6% | 28.0% |
| 6u7tA03 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.62 | 51.0 | 3.95e-01 | 100.0% | 63.6% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.09e-01 | 81.6% | 95.7% |
| 4nkwA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 45.0 | 2.64e-01 | 85.7% | 70.7% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.72e-01 | 83.7% | 65.5% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 43.0 | 2.60e-01 | 87.8% | 26.2% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.57 | 46.0 | 3.35e-01 | 100.0% | 96.5% |
| 5q22A02 | 3.40.50.12650 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 3.19e-01 | 85.7% | 58.1% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.60e-01 | 83.7% | 68.6% |
| 3ov5A00 | 3.55.50.70 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.56 | 42.0 | 3.65e-01 | 83.7% | 81.0% |
| 4e9jB01 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 41.0 | 3.06e-01 | 79.6% | 50.0% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.56 | 46.0 | 3.27e-01 | 100.0% | 48.5% |
| 4r78A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 39.0 | 2.73e-01 | 81.6% | 31.4% |
| 4epsA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.54 | 42.0 | 3.36e-01 | 100.0% | 93.8% |
| 1hfvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 2.96e-01 | 87.8% | 93.3% |
| 1darA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 2.85e-01 | 98.0% | 88.8% |
| 3fbsB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 42.0 | 2.95e-01 | 93.9% | 86.2% |
| 3petA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 43.0 | 2.89e-01 | 100.0% | 22.0% |
| 3gs9A02 | 3.55.50.40 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.52 | 46.0 | 3.75e-01 | 100.0% | 55.4% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 41.0 | 2.87e-01 | 100.0% | 86.0% |
| 2a02A01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.52 | 45.0 | 3.93e-01 | 100.0% | 66.7% |
| 4m0nA02 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.51 | 41.0 | 3.73e-01 | 100.0% | 89.6% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 34.0 | 2.56e-01 | 71.4% | 23.6% |
| 2w82A03 | 1.10.10.1190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 | 0.51 | 40.0 | 3.78e-01 | 93.9% | 98.4% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 38.0 | 3.16e-01 | 87.8% | 69.6% |
| 3p26A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 2.60e-01 | 89.8% | 83.3% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.50 | 39.0 | 2.88e-01 | 93.9% | 94.5% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 38.0 | 3.15e-01 | 89.8% | 72.8% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984657 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.78 | 67.0 | 5.66e-01 | 100.0% | 63.5% |
| 4960926 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.77 | 67.0 | 6.29e-01 | 100.0% | 90.0% |
| 3754085 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.73 | 63.0 | 4.99e-01 | 100.0% | 73.1% |
| 3261872 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.70 | 58.0 | 5.18e-01 | 98.0% | 92.0% |
| 3657758 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.70 | 54.0 | 4.72e-01 | 93.9% | 56.0% |
| 4928400 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.67 | 58.0 | 4.99e-01 | 100.0% | 97.5% |
| 3713915 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 48.0 | 4.81e-01 | 85.7% | 82.0% |
| 3344177 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.64 | 46.0 | 4.77e-01 | 93.9% | 91.1% |
| 4942023 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.63 | 54.0 | 5.27e-01 | 100.0% | 92.7% |
| 3958083 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.63 | 48.0 | 2.94e-01 | 89.8% | 33.2% |
| 3654329 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.62 | 53.0 | 4.43e-01 | 100.0% | 56.7% |
| 4986948 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.62 | 55.0 | 3.66e-01 | 100.0% | 96.8% |
| 4932691 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.61 | 52.0 | 4.43e-01 | 100.0% | 57.6% |
| 4820773 | 2484.1.1.70 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA | 0.61 | 45.0 | 3.41e-01 | 87.8% | 82.6% |
| 4935989 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.60 | 51.0 | 4.27e-01 | 100.0% | 54.4% |
| 4647064 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.60 | 42.0 | 4.03e-01 | 89.8% | 63.3% |
| 5027955 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.60 | 50.0 | 4.91e-01 | 100.0% | 92.7% |
| 5072250 | 316.1.1.41 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 | 0.60 | 44.0 | 3.13e-01 | 89.8% | 24.1% |
| 4937778 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.60 | 52.0 | 5.05e-01 | 100.0% | 92.7% |
| 5055391 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.59 | 43.0 | 2.83e-01 | 83.7% | 90.4% |
| 1833073 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.57 | 42.0 | 3.59e-01 | 79.6% | 84.1% |
| 3988793 | 101.1.2.93 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Mga | 0.56 | 41.0 | 3.51e-01 | 83.7% | 67.8% |
| 4087530 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.56 | 44.0 | 3.90e-01 | 89.8% | 85.3% |
| 4952922 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.56 | 43.0 | 2.97e-01 | 100.0% | 67.8% |
| 4484921 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.56 | 39.0 | 3.47e-01 | 77.6% | 86.3% |
| 3967139 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.56 | 41.0 | 3.59e-01 | 81.6% | 87.5% |
| 146927 | 3070.1.1.6 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › TcpQ | 0.55 | 42.0 | 3.28e-01 | 85.7% | 57.5% |
| 3305844 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.55 | 38.0 | 2.82e-01 | 71.4% | 35.2% |
| 4241517 | 3070.1.1.6 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › TcpQ | 0.55 | 46.0 | 4.01e-01 | 100.0% | 93.8% |
| 3972661 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.54 | 47.0 | 4.12e-01 | 100.0% | 65.3% |
| 3684568 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.53 | 41.0 | 2.77e-01 | 87.8% | 83.7% |
| 4201409 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.53 | 43.0 | 3.03e-01 | 100.0% | 86.8% |
| 4008875 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.53 | 46.0 | 4.01e-01 | 100.0% | 64.0% |
| 4979123 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.53 | 39.0 | 2.72e-01 | 81.6% | 33.3% |
| 3506705 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.53 | 41.0 | 3.07e-01 | 91.8% | 51.7% |
| 3163777 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.52 | 43.0 | 3.78e-01 | 100.0% | 82.5% |
| 4034461 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.52 | 46.0 | 3.68e-01 | 100.0% | 49.0% |
| 3948879 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.52 | 45.0 | 3.93e-01 | 100.0% | 64.0% |
| 4953306 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 36.0 | 2.41e-01 | 79.6% | 78.1% |
| 3966286 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.52 | 44.0 | 3.88e-01 | 100.0% | 64.0% |
| 2841806 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.51 | 39.0 | 3.43e-01 | 91.8% | 85.1% |
| 5007807 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.51 | 39.0 | 3.30e-01 | 89.8% | 47.4% |
| 3734596 | 7579.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 41.0 | 2.44e-01 | 100.0% | 76.4% |
| 5002751 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.51 | 42.0 | 3.66e-01 | 100.0% | 82.4% |
| 5030303 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.51 | 36.0 | 2.57e-01 | 79.6% | 48.9% |
| 4984484 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.51 | 40.0 | 2.87e-01 | 100.0% | 89.5% |
| 1108144 | 3070.1.1.7 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › FecR_C | 0.51 | 40.0 | 3.57e-01 | 100.0% | 82.1% |
| 4339226 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.50 | 44.0 | 3.70e-01 | 100.0% | 57.6% |
| 3503726 | 3070.1.1.8 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › DotD | 0.50 | 40.0 | 3.58e-01 | 100.0% | 83.7% |
| 4978972 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.50 | 38.0 | 2.70e-01 | 98.0% | 91.2% |
D2
high
residues 58-125
Domain cluster:
rep: S16_GE16_scaffold_10741_prodigal-single.1__X__X__00392__D3-52