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gwf1_scaffold_41_prodigal-single.1__X__X__00008

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00008

Identity

Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-92
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.71 50.0 4.62e-01 73.2% 88.8%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 51.0 4.07e-01 76.1% 95.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.71 50.0 3.73e-01 74.6% 91.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 51.0 4.11e-01 78.9% 97.8%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.68 48.0 4.31e-01 74.6% 94.1%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.67 46.0 4.14e-01 71.8% 84.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 49.0 3.99e-01 78.9% 97.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 52.0 4.27e-01 84.5% 99.2%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 47.0 3.79e-01 78.9% 96.4%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 50.0 4.26e-01 85.9% 75.4%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 47.0 3.07e-01 88.7% 93.3%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 42.0 3.60e-01 73.2% 95.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.59 50.0 4.01e-01 94.4% 91.6%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 46.0 3.93e-01 84.5% 100.0%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.25e-01 81.7% 56.1%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 44.0 3.17e-01 78.9% 57.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.60e-01 91.5% 58.4%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 51.0 4.80e-01 97.2% 98.8%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 40.0 3.55e-01 73.2% 88.5%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 48.0 3.93e-01 88.7% 60.2%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.46e-01 91.5% 54.3%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.56 46.0 3.48e-01 90.1% 78.4%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.60e-01 88.7% 58.6%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.55 43.0 3.57e-01 90.1% 95.1%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.32e-01 88.7% 60.4%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 36.0 3.77e-01 77.5% 75.8%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.54 45.0 3.99e-01 100.0% 97.4%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.36e-01 91.5% 65.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 40.0 4.15e-01 81.7% 92.5%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 39.0 3.53e-01 78.9% 98.0%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.35e-01 93.0% 57.1%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 43.0 3.99e-01 91.5% 68.8%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 46.0 3.19e-01 100.0% 40.2%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 45.0 3.52e-01 100.0% 99.4%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.78e-01 88.7% 99.7%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.07e-01 87.3% 57.8%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 46.0 3.11e-01 95.8% 85.1%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.11e-01 87.3% 56.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 47.0 3.18e-01 100.0% 44.7%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.23e-01 83.1% 53.1%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.36e-01 81.7% 58.7%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 3.54e-01 84.5% 81.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.80 57.0 4.00e-01 74.6% 85.2%
3404874 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.80 59.0 4.11e-01 77.5% 69.0%
3254772 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.76 56.0 3.93e-01 77.5% 76.7%
5081724 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 55.0 3.95e-01 77.5% 76.5%
3512735 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 55.0 3.80e-01 77.5% 63.1%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 55.0 3.80e-01 77.5% 74.2%
3857670 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.74 54.0 3.78e-01 76.1% 67.4%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 55.0 3.48e-01 77.5% 20.4%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.74 52.0 4.49e-01 73.2% 89.5%
3234981 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.73 54.0 3.79e-01 77.5% 66.7%
4962629 71.1.1.27 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF7537 0.72 52.0 3.72e-01 76.1% 84.7%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.71 52.0 5.11e-01 76.1% 100.0%
3287961 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.70 52.0 3.49e-01 78.9% 48.7%
3506427 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.70 57.0 4.74e-01 90.1% 84.0%
3520059 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 48.0 4.04e-01 73.2% 98.3%
4003103 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.68 62.0 4.85e-01 100.0% 68.3%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.68 57.0 4.18e-01 91.5% 88.6%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.67 50.0 4.12e-01 78.9% 97.7%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.67 46.0 4.25e-01 71.8% 90.3%
3929502 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 50.0 4.49e-01 97.2% 58.5%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 48.0 3.12e-01 74.6% 22.1%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.65 48.0 3.50e-01 77.5% 72.8%
3930197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.68e-01 97.2% 63.0%
3514491 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.65 46.0 2.86e-01 73.2% 16.7%
3233005 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 47.0 3.22e-01 76.1% 27.5%
3782222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 3.58e-01 74.6% 49.7%
3795930 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 47.0 3.84e-01 78.9% 97.1%
3544780 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 48.0 3.48e-01 78.9% 72.7%
3769483 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 47.0 3.93e-01 78.9% 98.4%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 43.0 3.51e-01 71.8% 61.9%
3173029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.26e-01 74.6% 42.1%
3389900 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 49.0 3.62e-01 87.3% 53.2%
3580950 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 51.0 3.48e-01 94.4% 62.6%
3899369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 42.0 3.34e-01 71.8% 53.3%
3531579 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 42.0 3.26e-01 71.8% 49.7%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 46.0 4.15e-01 100.0% 60.0%
3901787 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 48.0 3.63e-01 87.3% 56.6%
3706798 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 41.0 2.66e-01 71.8% 17.3%
2491500 5.1.7.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR_6, Sortilin-Vps10 0.60 48.0 2.93e-01 90.1% 95.1%
3597933 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 43.0 3.27e-01 77.5% 73.4%
3485287 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 49.0 3.57e-01 91.5% 54.6%
3740081 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.59 52.0 4.49e-01 97.2% 100.0%
3627339 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.58 48.0 3.51e-01 91.5% 55.5%
3479461 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 48.0 3.48e-01 91.5% 59.5%
3507415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 46.0 3.39e-01 85.9% 51.1%
3462090 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.58 40.0 2.59e-01 73.2% 81.9%
3411618 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 44.0 3.11e-01 81.7% 47.7%
3212280 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.88e-01 88.7% 84.9%
3627337 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 44.0 3.32e-01 83.1% 57.1%
3997908 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 47.0 3.55e-01 91.5% 58.9%
3604518 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.57 51.0 4.53e-01 97.2% 69.0%
5039218 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 44.0 3.64e-01 85.9% 99.2%
3941131 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.56 45.0 2.92e-01 88.7% 95.4%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 39.0 3.42e-01 74.6% 67.0%
3643793 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 40.0 2.61e-01 80.3% 90.4%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.67e-01 87.3% 84.7%
3801954 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 42.0 2.78e-01 94.4% 40.3%
4951147 881.4.1.0 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.51 43.0 3.58e-01 91.5% 78.3%
4998584 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 42.0 3.50e-01 95.8% 99.3%