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gwf1_scaffold_41_prodigal-single.1__X__X__00017

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00017

Identity

Kingdom:
phage

Quality

93.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-209
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.71 50.0 4.84e-01 100.0% 65.0%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.67 42.0 5.00e-01 100.0% 92.8%
4mgqA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 36.0 4.23e-01 88.5% 73.2%
4bbwA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 46.0 5.12e-01 97.6% 91.3%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.65 35.0 4.64e-01 96.2% 99.1%
6mvfA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 44.0 5.14e-01 100.0% 97.3%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 45.0 5.04e-01 96.6% 92.5%
1loxA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.63 28.0 3.78e-01 71.6% 76.6%
6oauA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.63 29.0 3.73e-01 71.6% 73.0%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.62 41.0 4.76e-01 99.5% 95.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.62 41.0 4.72e-01 100.0% 90.8%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.62 38.0 4.71e-01 99.5% 98.4%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 43.0 4.93e-01 100.0% 95.5%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 41.0 4.89e-01 100.0% 100.0%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.61 44.0 4.87e-01 99.0% 91.6%
3w6wB02 2.60.310.20 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › 0.61 33.0 3.98e-01 74.0% 78.7%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.60 31.0 4.15e-01 98.6% 99.0%
4cu9A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 47.0 5.14e-01 97.6% 98.3%
5euvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 42.0 4.90e-01 99.5% 100.0%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 46.0 4.94e-01 98.6% 93.3%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 28.0 3.72e-01 71.6% 80.5%
1wmxA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.59 47.0 5.13e-01 99.5% 100.0%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.59 41.0 4.27e-01 100.0% 76.3%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.58 34.0 4.04e-01 99.5% 82.6%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 4.80e-01 99.0% 98.1%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.58 37.0 4.29e-01 100.0% 88.6%
2zoeB02 2.60.120.1080 Mainly Beta › Sandwich › Jelly Rolls › 0.58 36.0 4.15e-01 93.8% 84.2%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 4.70e-01 100.0% 93.0%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 4.05e-01 100.0% 67.2%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 29.0 3.94e-01 78.8% 100.0%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 36.0 4.26e-01 99.0% 99.3%
3ptyA02 2.60.120.940 Mainly Beta › Sandwich › Jelly Rolls › EmbC, C-terminal domain, subdomain 2 0.54 44.0 4.72e-01 99.0% 99.4%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 4.22e-01 100.0% 75.2%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 4.27e-01 99.5% 93.8%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 36.0 4.17e-01 99.0% 95.2%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 4.42e-01 98.1% 89.4%
6ncyA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 41.0 4.31e-01 100.0% 85.9%
3iiiA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 4.57e-01 100.0% 96.7%
3obaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 4.37e-01 100.0% 85.3%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 31.0 3.91e-01 99.0% 99.1%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 35.0 4.06e-01 95.2% 94.5%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 4.12e-01 100.0% 92.7%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 4.38e-01 100.0% 95.6%
7vqmA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 4.44e-01 100.0% 98.3%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.76e-01 100.0% 64.8%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.99e-01 99.5% 91.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032741 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.90 71.0 7.88e-01 99.0% 98.8%
4970100 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.90 73.0 7.95e-01 97.6% 98.3%
5058402 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.90 74.0 8.01e-01 100.0% 97.8%
4955832 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.89 71.0 7.82e-01 99.0% 98.8%
4984620 10.2.1.104 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat 0.88 77.0 8.04e-01 100.0% 97.9%
5027796 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.87 70.0 7.64e-01 100.0% 97.7%
5060100 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.87 79.0 8.05e-01 98.6% 97.0%
4622880 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.86 67.0 7.51e-01 99.5% 99.4%
5059436 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.84 80.0 7.80e-01 100.0% 91.8%
5002813 10.2.1.104 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat 0.84 74.0 7.42e-01 100.0% 90.0%
3981402 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.82 66.0 6.84e-01 100.0% 87.7%
5020663 10.2.1.104 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat 0.82 74.0 5.16e-01 100.0% 33.2%
5059807 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.82 79.0 7.89e-01 99.5% 99.0%
5056076 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.81 71.0 7.42e-01 100.0% 97.9%
4631012 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.81 65.0 6.64e-01 100.0% 83.9%
3938488 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.81 48.0 4.94e-01 100.0% 62.1%
4025348 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.75 55.0 6.27e-01 97.1% 99.4%
3402319 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.71 51.0 5.06e-01 100.0% 70.0%
4281343 10.9.1.0 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin 0.68 50.0 5.68e-01 100.0% 100.0%
3860557 385.1.1.0 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.68 46.0 3.81e-01 100.0% 39.8%
4293266 10.2.1.97 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGF_beta 0.68 46.0 3.99e-01 100.0% 45.5%
5045890 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 39.0 4.55e-01 100.0% 79.3%
3774505 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.67 51.0 4.92e-01 100.0% 69.8%
3867993 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.65 50.0 5.08e-01 100.0% 80.0%
3567573 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.65 31.0 3.95e-01 72.1% 75.8%
3558842 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.65 47.0 4.52e-01 100.0% 64.4%
3598703 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 40.0 4.66e-01 100.0% 86.2%
3597600 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 39.0 4.74e-01 100.0% 92.6%
4268152 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.64 31.0 3.92e-01 72.6% 76.7%
3478158 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 38.0 4.74e-01 92.3% 96.0%
4243510 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.64 53.0 5.05e-01 100.0% 75.0%
4538527 11.1.5.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › AgI_II_C2 0.63 46.0 5.06e-01 99.5% 91.8%
4135250 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.63 51.0 4.26e-01 100.0% 50.3%
4550201 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.62 52.0 4.21e-01 100.0% 47.9%
3941823 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.61 44.0 5.04e-01 100.0% 100.0%
3713560 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 42.0 4.80e-01 97.6% 95.3%
1177377 10.32.1.34 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Lyase_N 0.61 44.0 4.71e-01 98.6% 85.0%
4286989 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.60 43.0 4.77e-01 99.5% 90.0%
4026174 5095.1.1.1 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.60 37.0 4.54e-01 96.2% 96.9%
4883090 10.2.1.20 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Birna_VP2 0.60 40.0 3.18e-01 99.5% 32.4%
3827637 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.60 36.0 3.45e-01 100.0% 51.0%
4377650 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 37.0 4.55e-01 100.0% 100.0%
3241208 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 31.0 4.08e-01 98.1% 94.5%
3571153 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.58 35.0 4.37e-01 98.6% 98.4%
5059291 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 45.0 4.94e-01 97.6% 100.0%
3999614 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 35.0 4.41e-01 81.7% 100.0%
3212672 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 32.0 4.14e-01 95.2% 98.2%
3805836 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 37.0 4.52e-01 100.0% 99.3%
5039918 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 38.0 4.51e-01 93.3% 97.9%
3714935 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 4.68e-01 100.0% 98.7%
3790333 11.1.1.1009 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 0.57 29.0 3.04e-01 100.0% 50.0%
3825418 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.57 36.0 4.12e-01 100.0% 84.5%
3364648 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 40.0 3.67e-01 100.0% 55.3%
2543579 10.32.1.62 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SGBP_B_XBD 0.56 52.0 4.92e-01 100.0% 99.2%
4012587 10.32.1.232 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360 0.56 43.0 4.74e-01 99.5% 98.8%
3822933 207.1.1.43 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.55 38.0 2.78e-01 100.0% 27.0%
3236029 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 31.0 3.92e-01 96.6% 95.7%
3222001 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 30.0 4.01e-01 93.3% 100.0%
3214212 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 30.0 3.95e-01 93.3% 100.0%
3322400 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 41.0 3.37e-01 100.0% 46.1%
3821996 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.53 38.0 3.27e-01 100.0% 46.8%
3382614 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 3.00e-01 100.0% 31.3%
1724852 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.52 37.0 4.11e-01 100.0% 92.2%
3958818 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 4.65e-01 100.0% 97.5%
3953514 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.51 45.0 4.64e-01 100.0% 98.0%
3334605 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.51 40.0 4.26e-01 100.0% 93.0%
D2 high residues 228-344
PDB