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gwf1_scaffold_41_prodigal-single.1__X__X__00032
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00032
Identity
- Kingdom:
- phage
Quality
78.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-77
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.80 | 55.0 | 4.83e-01 | 72.4% | 51.8% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.77 | 48.0 | 4.34e-01 | 82.8% | 47.4% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 55.0 | 5.59e-01 | 81.0% | 77.2% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 52.0 | 4.73e-01 | 72.4% | 61.0% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.75 | 52.0 | 4.83e-01 | 72.4% | 60.3% |
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.75 | 54.0 | 5.21e-01 | 77.6% | 89.6% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 52.0 | 4.18e-01 | 74.1% | 43.6% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 51.0 | 4.59e-01 | 72.4% | 71.8% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 56.0 | 4.95e-01 | 81.0% | 61.7% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.73 | 49.0 | 3.58e-01 | 72.4% | 26.7% |
| 7e4mA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.73 | 58.0 | 3.71e-01 | 86.2% | 21.1% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 50.0 | 5.03e-01 | 74.1% | 73.3% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.71 | 52.0 | 4.17e-01 | 96.6% | 40.9% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.71 | 47.0 | 4.70e-01 | 72.4% | 66.1% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.70 | 52.0 | 5.25e-01 | 98.3% | 82.8% |
| 2mvtA00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.70 | 47.0 | 5.05e-01 | 72.4% | 87.2% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.69 | 49.0 | 3.91e-01 | 75.9% | 38.1% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.68 | 51.0 | 4.38e-01 | 81.0% | 73.1% |
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.68 | 52.0 | 3.86e-01 | 82.8% | 45.1% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 47.0 | 3.55e-01 | 72.4% | 84.3% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 49.0 | 4.43e-01 | 75.9% | 63.6% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.67 | 58.0 | 5.28e-01 | 94.8% | 98.7% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 50.0 | 4.00e-01 | 82.8% | 67.9% |
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 49.0 | 3.37e-01 | 81.0% | 39.3% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.65 | 53.0 | 4.13e-01 | 86.2% | 79.6% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.64 | 57.0 | 3.88e-01 | 94.8% | 56.8% |
| 6ianC01 | 1.10.418.70 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain | 0.62 | 53.0 | 4.25e-01 | 96.6% | 97.5% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 55.0 | 4.65e-01 | 96.6% | 100.0% |
| 5a2gA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 48.0 | 2.83e-01 | 86.2% | 38.9% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.61 | 43.0 | 4.18e-01 | 74.1% | 75.0% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 49.0 | 3.79e-01 | 91.4% | 88.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 41.0 | 3.97e-01 | 75.9% | 80.6% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.57 | 43.0 | 3.02e-01 | 81.0% | 43.6% |
| 7wj9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 44.0 | 2.84e-01 | 84.5% | 89.1% |
| 7vhqU01 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.57 | 43.0 | 3.53e-01 | 81.0% | 75.5% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.59e-01 | 75.9% | 85.1% |
| 2mjfB00 | 1.20.1440.260 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.55 | 37.0 | 3.24e-01 | 75.9% | 43.2% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 40.0 | 3.84e-01 | 81.0% | 88.7% |
| 3mekA04 | 1.25.40.970 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 40.0 | 3.62e-01 | 89.7% | 82.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4185385 | 605.2.1.6 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Val_tRNA-synt_C | 0.85 | 59.0 | 5.47e-01 | 72.4% | 60.0% |
| 3589137 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.84 | 58.0 | 5.45e-01 | 72.4% | 60.0% |
| 4181677 | 192.29.1.272 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Val_tRNA-synt_C | 0.83 | 57.0 | 5.38e-01 | 72.4% | 60.0% |
| 3595063 | 192.8.1.343 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C | 0.82 | 57.0 | 5.50e-01 | 72.4% | 64.6% |
| 4013585 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.82 | 57.0 | 5.34e-01 | 72.4% | 62.9% |
| 4503822 | 3922.1.1.67 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C | 0.80 | 55.0 | 5.26e-01 | 72.4% | 61.8% |
| 4387824 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.80 | 55.0 | 5.19e-01 | 72.4% | 60.0% |
| 3704732 | 4095.1.1.0 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain | 0.80 | 54.0 | 4.74e-01 | 72.4% | 48.2% |
| 4383676 | 3922.1.1.67 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C | 0.79 | 54.0 | 5.12e-01 | 72.4% | 60.0% |
| 3735607 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.79 | 56.0 | 4.95e-01 | 74.1% | 56.2% |
| 185014 | 3393.1.1.1 ↗ | extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3_Cox_suIV | 0.78 | 56.0 | 5.40e-01 | 74.1% | 75.0% |
| 4520081 | 192.5.1.20 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Val_tRNA-synt_C | 0.78 | 55.0 | 5.50e-01 | 74.1% | 73.3% |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.78 | 56.0 | 4.07e-01 | 79.3% | 29.5% |
| 5082869 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.78 | 55.0 | 5.28e-01 | 74.1% | 70.8% |
| 5049361 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.76 | 54.0 | 4.83e-01 | 74.1% | 56.2% |
| 4938237 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.75 | 53.0 | 3.65e-01 | 74.1% | 25.9% |
| 3259416 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.74 | 45.0 | 4.27e-01 | 81.0% | 51.4% |
| 5069661 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.74 | 62.0 | 5.33e-01 | 91.4% | 62.2% |
| 3988454 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.71 | 52.0 | 4.84e-01 | 75.9% | 70.0% |
| 3314516 | 192.18.1.3 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › PIG-Y | 0.71 | 48.0 | 4.52e-01 | 70.7% | 85.7% |
| 4520759 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.69 | 52.0 | 3.57e-01 | 81.0% | 83.1% |
| 3626122 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 47.0 | 4.72e-01 | 72.4% | 70.0% |
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 43.0 | 4.47e-01 | 74.1% | 69.1% |
| 3510999 | 611.2.1.1 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Cbl_N | 0.67 | 53.0 | 4.25e-01 | 91.4% | 67.2% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.66 | 47.0 | 3.96e-01 | 74.1% | 46.3% |
| 4493879 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.66 | 47.0 | 3.79e-01 | 74.1% | 43.6% |
| 4281154 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.64 | 49.0 | 3.39e-01 | 82.8% | 77.8% |
| 5017280 | 2002.1.1.172 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C | 0.62 | 53.0 | 3.33e-01 | 93.1% | 39.3% |
| 4077521 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 43.0 | 3.70e-01 | 77.6% | 64.2% |
| 3376917 | 192.24.1.8 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › CDK5RAP3 | 0.56 | 45.0 | 4.00e-01 | 86.2% | 70.0% |