←Back to structures
gwf1_scaffold_41_prodigal-single.1__X__X__00073
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00073
Identity
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-166
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.73 | 41.0 | 5.40e-01 | 84.5% | 100.0% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.65 | 49.0 | 4.83e-01 | 77.0% | 96.5% |
| 4nyqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 42.0 | 4.29e-01 | 72.7% | 68.0% |
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.62 | 39.0 | 4.50e-01 | 90.7% | 86.3% |
| 3v8uA04 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.62 | 45.0 | 4.78e-01 | 74.5% | 96.5% |
| 3rwxA01 | 2.40.128.340 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 43.0 | 4.88e-01 | 70.8% | 95.0% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 38.0 | 4.53e-01 | 87.0% | 97.3% |
| 6c1zA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 41.0 | 4.34e-01 | 72.7% | 94.9% |
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 42.0 | 4.52e-01 | 87.6% | 92.7% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 43.0 | 4.47e-01 | 87.6% | 91.3% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.54 | 41.0 | 4.27e-01 | 91.9% | 84.7% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 38.0 | 4.19e-01 | 82.6% | 90.1% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 42.0 | 4.50e-01 | 83.2% | 97.8% |
| 2n93A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 39.0 | 4.27e-01 | 82.6% | 96.2% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.51 | 37.0 | 3.62e-01 | 75.2% | 78.0% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.51 | 31.0 | 3.38e-01 | 70.2% | 70.8% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 32.0 | 3.52e-01 | 76.4% | 76.5% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.50 | 31.0 | 3.74e-01 | 75.2% | 94.3% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 28.0 | 3.30e-01 | 85.1% | 80.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3506925 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.66 | 48.0 | 4.68e-01 | 75.8% | 93.9% |
| 3263743 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.63 | 45.0 | 5.11e-01 | 73.3% | 98.4% |
| 4668044 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.63 | 44.0 | 4.84e-01 | 72.0% | 97.7% |
| 5003221 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.62 | 39.0 | 4.56e-01 | 89.4% | 87.8% |
| 3487462 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.62 | 43.0 | 4.72e-01 | 70.2% | 96.9% |
| 3217505 | 9.1.1.55 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 | 0.60 | 41.0 | 4.72e-01 | 74.5% | 97.4% |
| 3215657 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.60 | 41.0 | 4.49e-01 | 70.8% | 95.6% |
| 3238997 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 42.0 | 4.56e-01 | 72.0% | 97.0% |
| 3225336 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.58 | 45.0 | 4.71e-01 | 86.3% | 89.7% |
| 2438877 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.57 | 41.0 | 4.34e-01 | 72.7% | 94.9% |
| 4927832 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.57 | 36.0 | 4.32e-01 | 82.6% | 94.5% |
| 4044030 | 4295.1.1.1 ↗ | beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC | 0.55 | 49.0 | 4.34e-01 | 97.5% | 97.0% |
| 2515335 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 44.0 | 4.48e-01 | 87.6% | 87.7% |
| 3642325 | 9.1.1.29 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C | 0.55 | 43.0 | 4.45e-01 | 83.9% | 87.6% |
| 5076844 | 4295.1.1.1 ↗ | beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC | 0.54 | 48.0 | 4.20e-01 | 96.9% | 92.2% |
| 3258731 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.52 | 40.0 | 4.25e-01 | 93.2% | 91.4% |
| 3179848 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.52 | 39.0 | 4.15e-01 | 95.0% | 89.2% |
| 3475877 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.52 | 39.0 | 4.02e-01 | 93.2% | 84.0% |
| 5009499 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.50 | 34.0 | 3.62e-01 | 82.6% | 80.0% |
D2
high
residues 172-278
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.65 | 52.0 | 4.07e-01 | 85.0% | 98.2% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.64 | 49.0 | 5.33e-01 | 89.7% | 98.9% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 52.0 | 4.52e-01 | 86.9% | 72.8% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.63 | 44.0 | 5.02e-01 | 79.4% | 98.7% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 37.0 | 4.62e-01 | 100.0% | 95.4% |
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 35.0 | 4.30e-01 | 81.3% | 87.7% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.60 | 46.0 | 3.25e-01 | 83.2% | 75.0% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 31.0 | 4.21e-01 | 93.5% | 94.8% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 46.0 | 3.20e-01 | 83.2% | 74.5% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 49.0 | 4.40e-01 | 93.5% | 68.8% |
| 2jjdF02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 44.0 | 3.33e-01 | 81.3% | 61.1% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 33.0 | 4.11e-01 | 80.4% | 96.8% |
| 4d47A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 48.0 | 3.31e-01 | 97.2% | 88.3% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 37.0 | 4.04e-01 | 95.3% | 81.8% |
| 7fisA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 46.0 | 3.37e-01 | 89.7% | 64.1% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 4.01e-01 | 90.7% | 79.0% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 4.24e-01 | 90.7% | 76.5% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 4.11e-01 | 82.2% | 75.4% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 30.0 | 2.90e-01 | 74.8% | 46.2% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 28.0 | 3.60e-01 | 72.9% | 88.7% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 39.0 | 3.40e-01 | 79.4% | 76.1% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.85e-01 | 82.2% | 82.6% |
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.51 | 38.0 | 4.04e-01 | 88.8% | 93.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942439 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.69 | 57.0 | 5.15e-01 | 88.8% | 93.8% |
| 3280401 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.67 | 37.0 | 4.66e-01 | 81.3% | 89.2% |
| 3969970 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.67 | 37.0 | 4.45e-01 | 82.2% | 80.0% |
| 1891431 | 9.1.1.28 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin | 0.66 | 55.0 | 5.24e-01 | 90.7% | 78.4% |
| 3291057 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.65 | 40.0 | 4.87e-01 | 81.3% | 95.7% |
| 3283509 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.63 | 54.0 | 5.37e-01 | 92.5% | 91.7% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 39.0 | 4.16e-01 | 77.6% | 72.6% |
| 3990703 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.60 | 53.0 | 4.67e-01 | 100.0% | 88.5% |
| 3699834 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.60 | 49.0 | 4.71e-01 | 89.7% | 95.2% |
| 3587129 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 35.0 | 4.33e-01 | 80.4% | 93.8% |
| 4625348 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.59 | 31.0 | 4.12e-01 | 92.5% | 93.3% |
| None | — | 0.58 | 45.0 | 3.25e-01 | 82.2% | 54.1% | |
| 3699353 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 45.0 | 3.19e-01 | 81.3% | 51.4% |
| 4502878 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.58 | 31.0 | 4.07e-01 | 93.5% | 95.0% |
| 3934802 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.58 | 39.0 | 4.15e-01 | 84.1% | 78.9% |
| 5003610 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.57 | 38.0 | 4.09e-01 | 77.6% | 77.9% |
| 6422 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.56 | 33.0 | 4.11e-01 | 80.4% | 96.8% |
| 3947367 | 206.1.1.35 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH_6_hur | 0.56 | 37.0 | 2.73e-01 | 86.0% | 26.0% |
| 3750387 | 5.1.4.166 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 | 0.55 | 48.0 | 3.26e-01 | 99.1% | 73.6% |
| 3277897 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.55 | 46.0 | 4.20e-01 | 93.5% | 82.7% |
| 3957605 | 243.1.1.35 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ORF_12_N | 0.54 | 42.0 | 4.42e-01 | 81.3% | 90.5% |
| 3924597 | 330.16.1.0 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain | 0.54 | 31.0 | 3.63e-01 | 76.6% | 85.7% |
| 4026208 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.53 | 37.0 | 3.65e-01 | 87.9% | 66.1% |
| 3981607 | 3816.1.1.1 ↗ | beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD | 0.53 | 37.0 | 4.27e-01 | 84.1% | 97.5% |
| 4056826 | 3816.1.1.1 ↗ | beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD | 0.53 | 37.0 | 4.25e-01 | 84.1% | 97.5% |
| 3968304 | 5.1.3.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated | 0.52 | 45.0 | 3.50e-01 | 99.1% | 88.5% |
| 3998600 | 5.1.2.46 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_IFT140_1st | 0.52 | 41.0 | 3.76e-01 | 85.0% | 75.0% |
| 3910381 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 45.0 | 2.85e-01 | 99.1% | 76.8% |
| 3714509 | 220.1.1.303 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 | 0.51 | 37.0 | 3.35e-01 | 91.6% | 53.5% |