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gwf1_scaffold_41_prodigal-single.1__X__X__00088
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00088
Identity
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-103
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 33.0 | 3.45e-01 | 71.0% | 60.2% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.56 | 22.0 | 2.88e-01 | 100.0% | 61.1% |
| 6sc4A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.56 | 38.0 | 3.17e-01 | 71.0% | 75.7% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 29.0 | 3.65e-01 | 97.0% | 92.9% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 27.0 | 3.48e-01 | 98.0% | 97.9% |
| 1bqbA01 | 3.10.170.10 | Alpha Beta › Roll › Elastase; domain 1 › | 0.52 | 34.0 | 2.95e-01 | 98.0% | 42.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3318055 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 29.0 | 4.35e-01 | 96.0% | 100.0% |
| 3455086 | 650.1.1.7 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Zn_ribbon_20 | 0.66 | 30.0 | 4.17e-01 | 99.0% | 93.3% |
| 3312874 | 375.3.1.0 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger | 0.63 | 30.0 | 3.96e-01 | 100.0% | 88.0% |
| 3361170 | 375.1.1.201 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 | 0.62 | 30.0 | 3.94e-01 | 100.0% | 90.0% |
| 3892736 | 103.1.1.67 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 | 0.59 | 27.0 | 3.71e-01 | 96.0% | 93.2% |
| 3507112 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.57 | 24.0 | 3.26e-01 | 100.0% | 74.0% |
| 3621229 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 38.0 | 4.42e-01 | 71.0% | 95.7% |
| 5078006 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.57 | 32.0 | 3.76e-01 | 100.0% | 78.6% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 26.0 | 3.53e-01 | 97.0% | 95.6% |
| 3226989 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.54 | 29.0 | 3.61e-01 | 99.0% | 90.9% |
| 4951670 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 31.0 | 3.71e-01 | 74.0% | 92.3% |
D2
medium
residues 107-166
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02810.22 best | SEC-C | 33.1 | 5.50e-08 | 31.7% | 94.7% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ef8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 45.0 | 3.38e-01 | 78.3% | 87.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 67.0 | 5.31e-01 | 98.3% | 48.3% |
| 3694591 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.71 | 56.0 | 4.45e-01 | 98.3% | 43.3% |
| 3980042 | 5043.1.1.14 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › DUF997 | 0.69 | 50.0 | 4.86e-01 | 81.7% | 69.2% |
| 4383563 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.51 | 36.0 | 3.12e-01 | 75.0% | 68.4% |