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gwf1_scaffold_41_prodigal-single.1__X__X__00136

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00136

Identity

Kingdom:
phage

Quality

77.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.75 63.0 5.38e-01 94.6% 68.9%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.73 54.0 5.76e-01 94.6% 89.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.73 63.0 5.25e-01 96.4% 72.9%
3spcA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 61.0 4.64e-01 96.4% 83.5%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 60.0 5.06e-01 94.6% 58.7%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 57.0 4.59e-01 94.6% 97.4%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.67 59.0 5.06e-01 100.0% 85.7%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.67 58.0 5.71e-01 98.2% 90.2%
4a64A01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 59.0 4.41e-01 98.2% 68.2%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 59.0 5.26e-01 98.2% 74.0%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.65 55.0 4.84e-01 92.9% 67.1%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.65 54.0 4.20e-01 94.6% 43.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 55.0 4.89e-01 96.4% 73.4%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 52.0 4.59e-01 98.2% 66.7%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 48.0 3.91e-01 100.0% 47.2%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.59 50.0 4.77e-01 92.9% 83.1%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.55 48.0 4.85e-01 94.6% 98.2%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.53 40.0 3.61e-01 80.4% 60.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000698 604.38.1.0 alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle 0.77 63.0 5.09e-01 89.3% 53.3%
3168103 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 61.0 5.07e-01 96.4% 54.7%
3718498 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.71 61.0 5.20e-01 94.6% 60.0%
5072037 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.68 56.0 5.27e-01 94.6% 77.1%
3493369 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.68 57.0 4.56e-01 100.0% 94.4%
5017743 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 59.0 5.11e-01 98.2% 82.4%
3413114 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.67 55.0 5.30e-01 94.6% 84.6%
3483128 592.4.1.0 alpha arrays › PWI domain-like › Repetitive domains of egg case silk protein TuSp1 › Repetitive domains of egg case silk protein TuSp1 0.66 58.0 3.85e-01 98.2% 57.4%
4349607 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.66 57.0 4.59e-01 96.4% 49.1%
4089826 622.1.1.33 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › T3SS_needle_F 0.65 55.0 4.91e-01 100.0% 69.4%
3616570 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 3.64e-01 94.6% 26.7%
4638470 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.64 54.0 3.92e-01 98.2% 67.6%
4950966 192.30.1.0 alpha bundles › Long alpha-hairpin › SepCysE N-terminal domain › SepCysE N-terminal domain 0.64 54.0 5.34e-01 98.2% 98.3%
3531423 5106.1.1.14 extended segments › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › TMEM174 0.64 53.0 5.37e-01 92.9% 94.5%
3902100 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.63 55.0 4.82e-01 98.2% 68.2%
4444553 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 52.0 3.30e-01 94.6% 20.6%
3723140 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.63 53.0 3.99e-01 96.4% 40.0%
3659915 192.7.1.45 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp 0.61 54.0 4.89e-01 96.4% 72.0%
3597412 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.59 53.0 3.39e-01 100.0% 21.1%
5057667 3352.1.1.19 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans2 0.57 49.0 3.01e-01 96.4% 28.1%
3376917 192.24.1.8 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › CDK5RAP3 0.56 45.0 4.13e-01 96.4% 66.3%
D2 medium residues 57-127
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.68 51.0 4.59e-01 97.2% 58.9%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 57.0 3.91e-01 98.6% 86.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 48.0 4.80e-01 91.5% 77.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.61 48.0 3.33e-01 85.9% 40.6%
2jbvA04 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.61 45.0 3.45e-01 80.3% 63.8%
1x6cA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 47.0 4.02e-01 88.7% 65.3%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.58 50.0 3.69e-01 95.8% 37.1%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 4.12e-01 88.7% 70.0%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.03e-01 100.0% 87.7%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 46.0 3.46e-01 90.1% 75.5%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 47.0 4.04e-01 93.0% 82.8%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 47.0 3.64e-01 95.8% 57.2%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 47.0 3.81e-01 100.0% 61.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 47.0 4.15e-01 100.0% 66.1%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 47.0 3.76e-01 100.0% 46.7%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.54 46.0 3.27e-01 100.0% 29.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.54 46.0 3.70e-01 94.4% 54.4%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.54 48.0 4.11e-01 100.0% 70.5%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.53 41.0 3.53e-01 95.8% 50.8%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 45.0 3.74e-01 100.0% 85.8%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.53 43.0 3.78e-01 94.4% 70.4%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 42.0 3.71e-01 94.4% 72.6%
4ydjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.57e-01 95.8% 88.9%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.42e-01 80.3% 85.6%
3dluA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.50 38.0 3.49e-01 81.7% 98.9%
7aj6H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.61e-01 95.8% 90.8%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 38.0 3.38e-01 81.7% 82.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4227571 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.72 39.0 3.44e-01 95.8% 38.0%
3600840 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 55.0 4.93e-01 94.4% 83.0%
4019666 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.64 52.0 3.21e-01 90.1% 67.8%
3726419 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.63 54.0 3.23e-01 95.8% 56.7%
3735021 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.63 50.0 3.04e-01 88.7% 61.0%
3205638 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.62 51.0 3.28e-01 93.0% 63.8%
3730814 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.62 51.0 3.10e-01 93.0% 63.6%
3222402 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 49.0 3.64e-01 93.0% 88.3%
3481274 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 51.0 4.26e-01 94.4% 62.9%
3599937 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 49.0 4.46e-01 94.4% 66.0%
5049631 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 49.0 4.04e-01 95.8% 48.6%
3268156 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.59 49.0 3.72e-01 94.4% 58.9%
4029654 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 45.0 3.93e-01 87.3% 82.5%
5050618 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 46.0 3.81e-01 93.0% 45.7%
4409019 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 43.0 4.13e-01 85.9% 73.8%
3672774 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.56 47.0 3.67e-01 100.0% 42.4%
4485729 1.1.5.44 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.55 43.0 3.50e-01 88.7% 66.7%
4950325 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.55 41.0 3.86e-01 78.9% 77.6%
3610276 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.55 43.0 3.36e-01 91.5% 57.8%
3459303 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.55 44.0 3.97e-01 88.7% 98.0%
3423522 7026.1.1.4 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.54 41.0 2.76e-01 83.1% 57.5%
3328712 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.53 39.0 2.72e-01 77.5% 67.4%
3297150 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.52e-01 90.1% 58.0%
3701386 7026.1.1.4 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.52 40.0 2.80e-01 87.3% 32.1%
3899657 7026.1.1.13 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.52 41.0 2.96e-01 87.3% 32.1%
4156749 3234.1.1.2 a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.52 40.0 2.76e-01 88.7% 22.1%
3497113 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 43.0 3.46e-01 100.0% 76.2%
3230984 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 41.0 3.42e-01 94.4% 61.4%
3787569 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.50 42.0 3.52e-01 95.8% 51.5%