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gwf1_scaffold_41_prodigal-single.1__X__X__00183

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00183

Identity

Kingdom:
phage

Quality

67.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-86
PDB
D2 high residues 96-240
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14730.12 best DUF4468 51.7 1.30e-13 60.7% 96.7%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.82 78.0 7.64e-01 100.0% 95.5%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.80 76.0 7.16e-01 100.0% 89.5%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.75 47.0 5.25e-01 98.6% 79.3%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 54.0 5.88e-01 97.9% 93.3%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.71 52.0 5.84e-01 97.2% 100.0%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.67 41.0 4.17e-01 71.0% 62.1%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 62.0 5.90e-01 97.9% 92.1%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.67 44.0 4.80e-01 95.2% 82.6%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 45.0 4.46e-01 71.0% 66.9%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 54.0 5.24e-01 100.0% 80.7%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 57.0 5.76e-01 97.9% 96.5%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.62 49.0 4.98e-01 98.6% 85.7%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 51.0 5.35e-01 97.9% 96.9%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 50.0 5.15e-01 96.6% 91.1%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 52.0 5.34e-01 97.9% 95.0%
5i8fA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 55.0 5.31e-01 97.9% 90.2%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 56.0 5.49e-01 97.9% 92.8%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.60 42.0 3.89e-01 71.0% 86.8%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 56.0 5.44e-01 100.0% 94.4%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 49.0 5.22e-01 96.6% 98.4%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 56.0 5.25e-01 100.0% 88.4%
3p51A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 53.0 5.33e-01 96.6% 95.2%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 54.0 5.45e-01 96.6% 97.2%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 53.0 5.15e-01 97.9% 90.2%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 53.0 5.12e-01 97.9% 90.2%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 53.0 5.08e-01 97.9% 92.6%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.57 48.0 3.85e-01 89.0% 60.5%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 52.0 5.13e-01 97.9% 96.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 51.0 5.14e-01 97.9% 97.3%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 52.0 4.80e-01 100.0% 98.9%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 39.0 2.97e-01 70.3% 88.9%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.56 30.0 3.11e-01 96.6% 52.9%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 40.0 2.95e-01 79.3% 59.9%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 37.0 4.06e-01 71.0% 92.9%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 46.0 4.00e-01 93.1% 83.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 48.0 4.28e-01 100.0% 79.8%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 36.0 2.83e-01 70.3% 95.0%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 38.0 4.22e-01 84.8% 100.0%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.39e-01 75.2% 85.6%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.82e-01 78.6% 100.0%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 35.0 3.91e-01 70.3% 92.7%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.50 42.0 3.81e-01 89.7% 100.0%
7fjlA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.50 46.0 3.79e-01 97.2% 71.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080438 331.3.1.16 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF4468 0.87 81.0 8.07e-01 97.9% 96.0%
1841012 331.3.1.16 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF4468 0.82 78.0 7.64e-01 100.0% 95.5%
5048999 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.80 53.0 5.46e-01 99.3% 70.0%
1841011 331.3.1.16 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF4468 0.79 75.0 7.00e-01 100.0% 88.4%
5047426 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.78 54.0 6.02e-01 97.2% 88.7%
5047424 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.77 54.0 5.99e-01 98.6% 86.7%
3601966 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.77 50.0 5.59e-01 97.9% 82.6%
5047928 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.76 53.0 5.84e-01 97.9% 86.7%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.75 49.0 5.40e-01 99.3% 81.7%
5044863 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.74 54.0 5.70e-01 98.6% 83.1%
3526482 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.73 46.0 5.31e-01 97.9% 86.7%
4999715 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.73 50.0 5.41e-01 97.2% 81.6%
4982195 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.72 50.0 5.26e-01 96.6% 78.5%
3958869 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.71 49.0 4.18e-01 70.3% 80.7%
3377619 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.69 48.0 4.36e-01 71.0% 68.6%
3961612 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.68 47.0 4.14e-01 70.3% 85.8%
3952886 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.68 47.0 4.10e-01 71.0% 80.5%
3630050 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.66 54.0 5.29e-01 97.9% 80.0%
3805100 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.65 45.0 4.14e-01 71.0% 58.5%
3591533 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 45.0 4.30e-01 71.0% 66.5%
3782223 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.64 58.0 5.01e-01 99.3% 73.8%
5058112 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.63 44.0 4.39e-01 71.0% 72.3%
3713199 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 43.0 3.79e-01 71.0% 89.8%
3395729 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 57.0 5.50e-01 97.9% 96.9%
3743876 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.61 56.0 4.87e-01 99.3% 77.3%
3829111 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 43.0 3.78e-01 71.0% 58.1%
3663259 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 43.0 4.42e-01 71.0% 85.2%
3700354 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 43.0 3.82e-01 71.0% 61.5%
3932316 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.61 51.0 5.33e-01 97.9% 97.7%
3437556 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.61 55.0 5.02e-01 97.9% 86.8%
4559431 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.61 55.0 4.77e-01 97.9% 72.3%
3170490 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.61 56.0 4.75e-01 99.3% 73.9%
3177804 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 46.0 4.45e-01 89.7% 71.2%
3366063 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 54.0 5.06e-01 97.9% 91.7%
5036533 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.60 45.0 3.88e-01 98.6% 50.2%
4956579 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 55.0 5.23e-01 97.2% 95.8%
3962319 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 41.0 4.09e-01 71.0% 83.3%
5005783 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 49.0 4.55e-01 88.3% 98.9%
3330462 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.58 51.0 5.07e-01 97.9% 95.5%
4776756 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.57 37.0 3.79e-01 94.5% 66.2%
3598852 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 53.0 4.23e-01 100.0% 68.4%
5038486 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 46.0 4.15e-01 87.6% 100.0%
3702434 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 51.0 4.33e-01 100.0% 76.7%
4959666 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 52.0 5.12e-01 99.3% 96.1%
3275961 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 50.0 4.54e-01 100.0% 85.0%
4946307 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.93e-01 98.6% 72.9%
6323 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 49.0 4.98e-01 97.2% 100.0%
3227663 12.3.1.18 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N 0.55 41.0 3.00e-01 77.2% 86.8%
3290484 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 46.0 4.31e-01 91.7% 99.4%
4377480 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.54 39.0 3.30e-01 75.2% 83.7%
4169955 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.54 37.0 3.26e-01 70.3% 85.0%
3838980 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.53 41.0 3.90e-01 83.4% 98.9%
1309699 881.1.1.11 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF5642 0.52 44.0 4.04e-01 90.3% 99.5%
3456369 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.51 41.0 3.81e-01 86.9% 81.6%