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gwf1_scaffold_41_prodigal-single.1__X__X__00186
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00186
Identity
- Kingdom:
- phage
Quality
49.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-106
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.74 | 54.0 | 4.23e-01 | 100.0% | 37.6% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 43.0 | 5.20e-01 | 92.3% | 100.0% |
| 1gzeA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.67 | 47.0 | 3.75e-01 | 73.1% | 75.8% |
| 1qs1A02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.66 | 46.0 | 3.70e-01 | 71.2% | 74.6% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 40.0 | 4.89e-01 | 90.4% | 100.0% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.62 | 38.0 | 4.53e-01 | 87.5% | 100.0% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.61 | 43.0 | 4.86e-01 | 96.2% | 98.7% |
| 4b0bB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 47.0 | 3.99e-01 | 84.6% | 95.3% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 33.0 | 3.94e-01 | 72.1% | 83.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 37.0 | 4.23e-01 | 92.3% | 95.7% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 41.0 | 4.45e-01 | 92.3% | 92.8% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 44.0 | 3.88e-01 | 83.7% | 83.3% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 43.0 | 4.21e-01 | 80.8% | 98.2% |
| 1d1jB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.56 | 36.0 | 3.34e-01 | 86.5% | 50.0% |
| 4rmoA00 | 3.10.129.130 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.55 | 46.0 | 4.10e-01 | 93.3% | 75.3% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 45.0 | 3.77e-01 | 98.1% | 53.2% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 47.0 | 4.24e-01 | 95.2% | 77.2% |
| 5o16B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.54 | 42.0 | 3.14e-01 | 84.6% | 44.9% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 3.88e-01 | 94.2% | 72.7% |
| 3zxkA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.55e-01 | 95.2% | 97.2% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.51 | 31.0 | 2.84e-01 | 82.7% | 44.2% |
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.51 | 36.0 | 3.36e-01 | 87.5% | 57.1% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 41.0 | 4.29e-01 | 93.3% | 95.7% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 39.0 | 4.11e-01 | 82.7% | 97.9% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 28.0 | 3.26e-01 | 71.2% | 78.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4093836 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 43.0 | 5.44e-01 | 88.5% | 96.7% |
| 3392130 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.75 | 44.0 | 5.48e-01 | 88.5% | 93.8% |
| 4956443 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 44.0 | 5.53e-01 | 91.3% | 100.0% |
| 5051313 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 46.0 | 5.56e-01 | 96.2% | 100.0% |
| 3290564 | 4.1.1.292 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 | 0.72 | 51.0 | 5.45e-01 | 94.2% | 85.6% |
| 3495447 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.66 | 41.0 | 3.99e-01 | 92.3% | 54.2% |
| 3530890 | 2004.1.1.402 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT | 0.66 | 53.0 | 5.68e-01 | 93.3% | 100.0% |
| 3706361 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 56.0 | 5.30e-01 | 96.2% | 94.4% |
| 3937006 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 45.0 | 5.08e-01 | 92.3% | 100.0% |
| 3589730 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.62 | 44.0 | 4.83e-01 | 94.2% | 96.2% |
| 5017073 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.61 | 42.0 | 3.76e-01 | 97.1% | 49.3% |
| 3291521 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.61 | 48.0 | 4.21e-01 | 83.7% | 96.7% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.60 | 40.0 | 4.56e-01 | 92.3% | 94.7% |
| 3480200 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 42.0 | 4.80e-01 | 85.6% | 100.0% |
| 3966308 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 47.0 | 3.98e-01 | 84.6% | 94.7% |
| 4962104 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.57 | 39.0 | 3.63e-01 | 70.2% | 80.8% |
| 3445449 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.57 | 42.0 | 3.85e-01 | 84.6% | 59.3% |
| 4261760 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.56 | 42.0 | 4.34e-01 | 90.4% | 85.3% |
| 3618088 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 48.0 | 4.21e-01 | 96.2% | 94.4% |
| None | — | 0.56 | 48.0 | 3.49e-01 | 94.2% | 40.3% | |
| 4986681 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.55 | 43.0 | 3.75e-01 | 85.6% | 54.8% |
| 3580912 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.55 | 39.0 | 3.51e-01 | 74.0% | 73.3% |
| 3445055 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.55 | 47.0 | 4.76e-01 | 97.1% | 90.5% |
| 3625002 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 48.0 | 3.50e-01 | 99.0% | 45.2% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.54 | 35.0 | 3.90e-01 | 73.1% | 85.0% |
| 3206580 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.54 | 42.0 | 3.78e-01 | 85.6% | 93.3% |
| 3686470 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.53 | 41.0 | 3.72e-01 | 84.6% | 89.3% |
| 3811267 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.53 | 47.0 | 3.61e-01 | 99.0% | 81.6% |
| 3852952 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.53 | 34.0 | 3.79e-01 | 74.0% | 83.7% |
| 3939132 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 44.0 | 4.55e-01 | 95.2% | 96.0% |
| 4928923 | 4200.1.1.0 ↗ | beta barrels › YmcC-like › YmcC-like › YmcC-like | 0.52 | 45.0 | 3.70e-01 | 95.2% | 98.4% |
| 3472583 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 43.0 | 3.96e-01 | 91.3% | 92.1% |
| 3383768 | 220.1.1.80 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N | 0.52 | 38.0 | 3.44e-01 | 78.8% | 65.3% |
| 4116159 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.52 | 34.0 | 3.64e-01 | 74.0% | 77.8% |
| 4560358 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.50 | 39.0 | 3.63e-01 | 84.6% | 86.4% |
| 3781326 | 868.1.1.8 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C | 0.50 | 39.0 | 2.84e-01 | 83.7% | 84.1% |
| 4425437 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.50 | 44.0 | 3.32e-01 | 100.0% | 88.0% |
D2
high
residues 136-235