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gwf1_scaffold_41_prodigal-single.1__X__X__00206
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00206
Identity
- Kingdom:
- phage
Quality
50.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 278-381
Domain cluster:
rep: IMGVR_UViG_2529292698_000003-2529292698-2529621151__D464-562
D2
medium
residues 115-188
D3
medium
residues 189-267
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d6fC03 | 1.10.150.380 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain | 0.76 | 48.0 | 5.79e-01 | 83.5% | 98.1% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 43.0 | 4.77e-01 | 82.3% | 89.8% |
| 3fkeA01 | 1.10.8.950 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain | 0.63 | 47.0 | 4.94e-01 | 83.5% | 97.2% |
| 1rrmA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.61 | 44.0 | 3.38e-01 | 78.5% | 93.5% |
| 6vvoC02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 45.0 | 4.87e-01 | 86.1% | 100.0% |
| 1njgB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 45.0 | 4.62e-01 | 86.1% | 89.0% |
| 1oj7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.59 | 42.0 | 3.24e-01 | 78.5% | 94.6% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 47.0 | 3.30e-01 | 87.3% | 95.0% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.58 | 39.0 | 4.21e-01 | 72.2% | 83.6% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 40.0 | 3.64e-01 | 70.9% | 61.8% |
| 1iokA02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.57 | 40.0 | 3.85e-01 | 97.5% | 63.0% |
| 4q2cA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.57 | 48.0 | 3.40e-01 | 94.9% | 38.4% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.57 | 42.0 | 4.03e-01 | 81.0% | 89.6% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.57 | 39.0 | 3.60e-01 | 74.7% | 54.9% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 47.0 | 4.19e-01 | 91.1% | 95.5% |
| 1sxjD02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 45.0 | 4.68e-01 | 96.2% | 100.0% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 40.0 | 3.29e-01 | 83.5% | 60.6% |
| 2zb9A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 39.0 | 3.30e-01 | 79.7% | 86.2% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 35.0 | 3.60e-01 | 93.7% | 71.8% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.02e-01 | 100.0% | 70.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974573 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.72 | 44.0 | 4.50e-01 | 77.2% | 64.0% |
| 4837332 | 3238.2.1.0 ↗ | alpha superhelices › Mitochondrial mTERF-like › Transcription activator-like effector (TALE) › Transcription activator-like effector (TALE) | 0.67 | 60.0 | 4.36e-01 | 98.7% | 39.8% |
| 3944103 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.65 | 53.0 | 4.06e-01 | 100.0% | 38.9% |
| 4955070 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 48.0 | 5.17e-01 | 97.5% | 96.9% |
| 1721457 | 3238.2.1.0 ↗ | alpha superhelices › Mitochondrial mTERF-like › Transcription activator-like effector (TALE) › Transcription activator-like effector (TALE) | 0.61 | 54.0 | 3.51e-01 | 100.0% | 28.0% |
| 4974404 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.60 | 40.0 | 3.40e-01 | 94.9% | 45.0% |
| 5002943 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.58 | 47.0 | 4.52e-01 | 89.9% | 91.1% |
| 4974816 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 44.0 | 4.04e-01 | 92.4% | 92.7% |
| 3245244 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.53 | 45.0 | 2.87e-01 | 100.0% | 73.2% |
| 5022856 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.52 | 36.0 | 3.14e-01 | 96.2% | 46.8% |
| 5054472 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.52 | 41.0 | 3.30e-01 | 88.6% | 93.3% |
D4
medium
residues 564-678