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gwf1_scaffold_41_prodigal-single.1__X__X__00268

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00268

Identity

Kingdom:
phage

Quality

88.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-61
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 51.0 5.23e-01 86.9% 79.3%
6bz0D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 54.0 3.65e-01 82.0% 44.7%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.68 53.0 4.97e-01 91.8% 68.8%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.64 50.0 5.18e-01 86.9% 96.5%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.62 44.0 4.57e-01 85.2% 87.0%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 49.0 4.57e-01 86.9% 76.0%
3q2eA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 53.0 4.46e-01 100.0% 83.2%
3cf6E01 1.10.8.1240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 41.0 4.62e-01 73.8% 97.8%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 45.0 4.57e-01 86.9% 88.7%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.54e-01 90.2% 84.1%
4is7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 46.0 4.44e-01 91.8% 90.3%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.51 39.0 3.67e-01 93.4% 97.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051051 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.96 91.0 6.31e-01 100.0% 35.9%
4962879 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.96 85.0 5.96e-01 93.4% 35.0%
4945101 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.95 90.0 6.16e-01 100.0% 33.9%
4963511 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.94 88.0 6.03e-01 98.4% 33.3%
4946450 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.94 89.0 7.67e-01 100.0% 69.3%
4945073 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.94 88.0 7.55e-01 100.0% 67.8%
5002913 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.86 76.0 5.42e-01 96.7% 37.1%
4999336 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.84 76.0 6.73e-01 98.4% 75.3%
5021605 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.84 70.0 5.02e-01 90.2% 35.8%
4935180 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.81 72.0 6.04e-01 98.4% 63.0%
3723084 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.80 63.0 6.05e-01 86.9% 82.9%
3991312 101.1.17.16 alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th 0.72 51.0 5.33e-01 83.6% 83.6%
5037107 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 5.10e-01 88.5% 65.0%
5023530 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.70 46.0 4.71e-01 72.1% 70.0%
4982798 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.68 57.0 4.99e-01 93.4% 73.3%
3428929 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.61 52.0 4.53e-01 100.0% 87.0%
3467177 219.1.1.86 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF778 0.58 47.0 3.42e-01 93.4% 91.3%
3060784 4163.1.2.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 0.56 50.0 4.01e-01 100.0% 52.5%
4431938 507.1.1.7 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › PF30523 0.54 44.0 3.15e-01 95.1% 66.3%
4927630 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 45.0 4.19e-01 96.7% 93.8%
3657326 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.52 43.0 3.83e-01 98.4% 64.2%
5023512 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 43.0 2.65e-01 95.1% 34.7%
D2 high residues 82-148
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 35.0 3.88e-01 100.0% 64.8%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.59 39.0 3.60e-01 92.5% 52.3%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 33.0 3.72e-01 100.0% 74.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 42.0 4.39e-01 100.0% 89.7%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.58 45.0 3.80e-01 86.6% 67.8%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.14e-01 98.5% 93.1%
2v0cA03 2.30.210.10 Mainly Beta › Roll › Leucyl-tRNA synthetase, domain 3 › Leucyl-tRNA synthetase, domain 3 0.54 35.0 3.80e-01 100.0% 78.9%
5a35A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 36.0 3.12e-01 71.6% 92.9%
3fmcA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 44.0 4.27e-01 97.0% 85.1%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 35.0 2.80e-01 70.1% 85.7%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 40.0 3.10e-01 89.6% 55.5%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 42.0 3.49e-01 100.0% 67.6%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.50 40.0 3.19e-01 94.0% 89.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962879 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.82 76.0 5.55e-01 100.0% 41.1%
4946412 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.78 71.0 5.88e-01 100.0% 73.9%
4945600 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.78 71.0 5.72e-01 100.0% 68.0%
4933787 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.74 68.0 4.96e-01 100.0% 44.1%
4961788 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.69 61.0 5.35e-01 100.0% 71.0%
4933665 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.66 56.0 5.13e-01 100.0% 71.1%
3940894 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.61 44.0 3.44e-01 77.6% 98.0%
3735882 5.1.4.352 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28370 0.58 48.0 2.95e-01 98.5% 92.4%
4952888 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 4.50e-01 95.5% 98.2%
3722860 2004.1.1.463 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.57 47.0 2.89e-01 95.5% 70.2%
5072502 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 4.45e-01 97.0% 94.8%
3864513 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.22e-01 74.6% 61.6%
4567448 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 39.0 3.82e-01 77.6% 68.0%
3993716 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.55 32.0 3.23e-01 89.6% 54.3%
3653644 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.54 46.0 3.57e-01 100.0% 83.6%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 46.0 3.77e-01 100.0% 84.4%
3996007 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.52 43.0 2.65e-01 95.5% 43.6%
5067107 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.51 39.0 3.70e-01 85.1% 94.1%
4972931 220.1.1.321 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF4429 0.51 43.0 3.53e-01 95.5% 78.4%
D3 medium residues 188-245
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 72.0 6.59e-01 100.0% 80.0%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 68.0 6.72e-01 96.6% 95.2%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 71.0 4.91e-01 100.0% 33.0%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.78 66.0 5.37e-01 94.8% 92.7%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 57.0 4.79e-01 79.3% 68.4%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 67.0 6.46e-01 98.3% 86.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 5.94e-01 98.3% 91.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 57.0 5.63e-01 84.5% 85.2%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 58.0 5.17e-01 96.6% 98.9%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 59.0 5.72e-01 98.3% 88.1%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 5.35e-01 75.9% 92.0%
1pn9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 55.0 4.32e-01 93.1% 44.6%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.67 59.0 4.63e-01 100.0% 48.8%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 50.0 4.72e-01 96.6% 67.6%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.65 50.0 3.25e-01 84.5% 18.4%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 47.0 3.98e-01 82.8% 57.4%
7cosB02 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.62 46.0 4.16e-01 79.3% 98.7%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.61 40.0 4.64e-01 77.6% 97.6%
3lyeA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.61 44.0 2.87e-01 84.5% 16.1%
2pjwH00 1.20.5.1940 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 42.0 3.77e-01 81.0% 55.7%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 47.0 3.26e-01 91.4% 31.4%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 4.56e-01 93.1% 94.7%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 37.0 3.73e-01 70.7% 73.3%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.55 44.0 4.12e-01 98.3% 78.2%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.54 44.0 3.46e-01 98.3% 43.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943798 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.91 84.0 5.49e-01 100.0% 27.3%
4997554 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.90 82.0 5.91e-01 100.0% 40.0%
5055179 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.87 79.0 5.25e-01 100.0% 28.6%
5055460 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.77 63.0 4.07e-01 91.4% 20.4%
4401282 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.73 63.0 5.13e-01 100.0% 54.8%
3533348 3476.1.1.0 alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.73 62.0 5.83e-01 100.0% 90.7%
3482082 3476.1.1.0 alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.72 64.0 6.02e-01 98.3% 88.6%
222846 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.71 62.0 5.38e-01 100.0% 78.5%
3344575 9.26.1.0 beta barrels › Lipocalins/Streptavidin 0.71 61.0 4.17e-01 98.3% 28.2%
4197529 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.71 61.0 5.04e-01 100.0% 66.4%
3585028 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.71 58.0 4.88e-01 91.4% 59.0%
4016091 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 59.0 5.18e-01 91.4% 63.5%
3606822 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.70 56.0 4.70e-01 87.9% 55.0%
3468446 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.70 58.0 4.29e-01 91.4% 53.8%
3563090 3476.1.1.0 alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.68 52.0 4.69e-01 82.8% 61.3%
3633621 192.5.1.16 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PF26729 0.68 58.0 5.33e-01 100.0% 77.5%
None 0.68 55.0 3.80e-01 93.1% 27.6%
3809086 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.67 55.0 4.79e-01 87.9% 72.9%
3831185 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 56.0 5.24e-01 89.7% 91.4%
5083838 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.66 54.0 3.58e-01 89.7% 24.3%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.65 55.0 5.28e-01 91.4% 96.9%
5069130 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.64 44.0 4.72e-01 77.6% 84.0%
3731364 3922.1.1.137 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA 0.63 54.0 5.27e-01 98.3% 90.8%
3975557 3782.1.1.0 a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related 0.61 46.0 4.52e-01 84.5% 100.0%