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gwf1_scaffold_41_prodigal-single.1__X__X__00308

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00308

Identity

Kingdom:
phage

Quality

93.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-45
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 62.0 4.50e-01 100.0% 69.8%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 56.0 4.04e-01 86.4% 75.0%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 59.0 4.56e-01 100.0% 89.6%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 59.0 4.10e-01 100.0% 57.0%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.68 50.0 3.34e-01 79.5% 66.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.68 47.0 4.67e-01 72.7% 97.8%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 53.0 4.75e-01 100.0% 62.1%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.66 44.0 2.92e-01 70.5% 18.8%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.65 55.0 3.91e-01 97.7% 61.6%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 46.0 2.88e-01 77.3% 47.8%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.65 56.0 3.96e-01 100.0% 74.3%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.63 47.0 3.07e-01 86.4% 77.1%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.63 51.0 3.86e-01 97.7% 61.3%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.63 54.0 3.90e-01 100.0% 43.0%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 55.0 3.77e-01 100.0% 45.0%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.63 52.0 4.57e-01 93.2% 100.0%
5cxwA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 51.0 3.05e-01 100.0% 67.8%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 43.0 3.44e-01 72.7% 36.7%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 51.0 4.09e-01 100.0% 55.1%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.76e-01 75.0% 50.0%
1b7yA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 52.0 3.29e-01 100.0% 40.0%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.61 51.0 4.17e-01 100.0% 64.0%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 50.0 3.03e-01 100.0% 70.8%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 48.0 3.70e-01 100.0% 80.5%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 40.0 2.87e-01 75.0% 31.9%
2dmzA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 49.0 3.95e-01 100.0% 92.6%
2xp1A02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 42.0 3.54e-01 79.5% 45.0%
2yt7A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 49.0 4.04e-01 100.0% 98.9%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 41.0 3.50e-01 72.7% 46.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 41.0 2.91e-01 79.5% 24.0%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 46.0 3.35e-01 100.0% 55.9%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 45.0 3.64e-01 90.9% 70.1%
1p1dA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 47.0 3.77e-01 100.0% 89.4%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 43.0 3.24e-01 95.5% 74.8%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 41.0 3.47e-01 86.4% 50.0%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.62e-01 100.0% 99.6%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.17e-01 88.6% 41.0%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 34.0 2.12e-01 70.5% 9.0%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.51 37.0 3.20e-01 88.6% 57.5%
1m53A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.25e-01 84.1% 66.2%
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.51 41.0 3.20e-01 100.0% 57.1%
3g5kA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 39.0 2.63e-01 86.4% 30.6%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 2.94e-01 100.0% 57.6%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4251848 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.79 70.0 4.83e-01 100.0% 53.8%
3672678 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.75 63.0 5.05e-01 100.0% 48.2%
3248406 1133.1.1.1 ↗ beta sandwiches › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain › ComC_SSD 0.74 51.0 3.91e-01 72.7% 34.0%
3409245 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.74 64.0 4.96e-01 100.0% 76.0%
3474293 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 63.0 4.37e-01 100.0% 50.7%
4020977 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 63.0 4.03e-01 100.0% 53.4%
3280174 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.70 61.0 4.93e-01 100.0% 95.3%
4542815 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.69 58.0 4.17e-01 100.0% 62.9%
3808166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 4.81e-01 100.0% 48.9%
5056920 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.68 56.0 3.40e-01 95.5% 25.9%
4350660 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.67 58.0 3.54e-01 100.0% 14.9%
4866061 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.67 57.0 4.45e-01 100.0% 90.2%
3242741 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 57.0 3.57e-01 100.0% 21.3%
4228874 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.67 59.0 4.93e-01 100.0% 61.3%
None — 0.67 55.0 3.33e-01 100.0% 15.7%
3267108 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.66 44.0 2.63e-01 70.5% 11.3%
3227424 331.18.1.8 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › BBS7_pf 0.65 57.0 4.32e-01 100.0% 60.0%
3506182 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.65 54.0 3.24e-01 100.0% 97.5%
3926438 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.65 56.0 3.48e-01 100.0% 42.0%
3219318 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 56.0 3.39e-01 100.0% 21.0%
3245986 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 55.0 3.52e-01 100.0% 25.7%
3222725 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 55.0 3.37e-01 100.0% 18.7%
4679944 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.64 55.0 4.02e-01 100.0% 64.2%
4024042 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.64 54.0 3.65e-01 100.0% 60.5%
5065641 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 56.0 3.89e-01 100.0% 50.7%
3212404 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 54.0 3.38e-01 100.0% 21.2%
3619712 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.64 53.0 3.06e-01 100.0% 89.9%
3223155 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 55.0 3.44e-01 100.0% 20.9%
4261091 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 54.0 3.95e-01 100.0% 63.6%
4965513 331.19.1.5 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › DUF5784 0.63 55.0 4.21e-01 100.0% 64.8%
4281188 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.63 54.0 3.95e-01 100.0% 61.6%
3225518 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 54.0 3.41e-01 100.0% 22.9%
3577311 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 54.0 4.22e-01 100.0% 44.0%
3242542 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 54.0 3.37e-01 100.0% 21.2%
None — 0.62 54.0 3.15e-01 100.0% 11.8%
3495992 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.62 52.0 3.95e-01 100.0% 68.7%
3407484 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.62 52.0 3.64e-01 100.0% 93.5%
3244738 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.61 52.0 4.13e-01 100.0% 77.9%
4544432 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 49.0 3.75e-01 100.0% 70.4%
3796013 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.61 53.0 3.82e-01 100.0% 63.1%
3556721 5.1.4.350 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR41 0.61 51.0 2.98e-01 100.0% 88.9%
3243473 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.61 51.0 3.19e-01 100.0% 17.2%
3787968 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 2.93e-01 100.0% 95.3%
3822338 223.1.1.77 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_3 0.60 51.0 3.86e-01 100.0% 67.0%
3225818 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.60 51.0 3.24e-01 100.0% 27.5%
3744837 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 46.0 3.56e-01 100.0% 35.4%
3243132 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 51.0 3.24e-01 100.0% 24.3%
3658860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 42.0 2.68e-01 72.7% 15.5%
3875237 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 48.0 2.65e-01 95.5% 37.3%
3244742 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 50.0 3.10e-01 100.0% 23.8%
5036622 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 47.0 3.47e-01 100.0% 31.7%
3478952 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.59 51.0 3.58e-01 100.0% 64.3%
3709649 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.58 41.0 2.97e-01 72.7% 36.2%
2132873 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.58 44.0 3.41e-01 86.4% 41.3%
4544551 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.57 47.0 3.54e-01 97.7% 53.3%
4368601 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 48.0 3.79e-01 100.0% 60.0%
3908890 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.57 41.0 2.64e-01 77.3% 17.7%
4019954 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 47.0 2.80e-01 97.7% 95.6%
3433209 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.56 43.0 3.33e-01 86.4% 41.9%
3640593 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 44.0 2.65e-01 97.7% 99.1%
3628840 12.1.1.29 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_30C 0.56 45.0 3.46e-01 97.7% 88.3%
3258975 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.56 42.0 3.35e-01 86.4% 44.0%
5040494 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 46.0 3.27e-01 97.7% 44.0%
4097208 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 39.0 3.36e-01 72.7% 45.7%
3580553 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 42.0 2.79e-01 86.4% 68.0%
3976146 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 44.0 2.81e-01 100.0% 17.0%
3790971 5.1.4.151 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.52 42.0 2.40e-01 95.5% 10.0%
3911275 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 39.0 2.36e-01 90.9% 39.0%
3525784 11.1.1.588 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C 0.52 43.0 3.17e-01 100.0% 87.2%
4628096 304.51.1.22 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › PF29613 0.52 41.0 3.20e-01 100.0% 69.4%
3181024 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.50 39.0 3.03e-01 100.0% 68.5%