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gwf1_scaffold_41_prodigal-single.1__X__X__00326

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00326

Identity

Kingdom:
phage

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.78 62.0 3.64e-01 86.5% 24.8%
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 52.0 4.36e-01 71.2% 80.2%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 58.0 4.24e-01 86.5% 73.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.04e-01 92.3% 81.0%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.71 62.0 5.04e-01 100.0% 73.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 56.0 5.17e-01 90.4% 90.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.71 57.0 5.06e-01 90.4% 72.7%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.70 61.0 5.47e-01 98.1% 74.0%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 52.0 4.23e-01 84.6% 99.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.40e-01 100.0% 97.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.16e-01 94.2% 100.0%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 55.0 4.49e-01 92.3% 77.9%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 59.0 5.25e-01 100.0% 98.7%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.03e-01 84.6% 91.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.37e-01 100.0% 96.9%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.66 44.0 4.93e-01 84.6% 94.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 4.81e-01 88.5% 100.0%
3mhxB00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 52.0 4.68e-01 98.1% 90.1%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.64 44.0 4.69e-01 82.7% 97.5%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 50.0 4.13e-01 90.4% 72.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.89e-01 92.3% 88.3%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.66e-01 82.7% 69.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 4.25e-01 80.8% 83.8%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.62 49.0 3.85e-01 90.4% 99.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.50e-01 88.5% 87.9%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.86e-01 86.5% 100.0%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.61 41.0 3.78e-01 71.2% 93.2%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 51.0 4.30e-01 94.2% 74.4%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.84e-01 100.0% 39.4%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.72e-01 84.6% 90.2%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 50.0 4.21e-01 96.2% 76.3%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 3.90e-01 86.5% 91.8%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.38e-01 92.3% 96.9%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 48.0 4.11e-01 96.2% 100.0%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.39e-01 84.6% 65.5%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 46.0 3.92e-01 100.0% 55.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.71e-01 84.6% 80.5%
7asgA02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.56 44.0 3.58e-01 94.2% 43.7%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.55 34.0 3.22e-01 82.7% 46.9%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.68e-01 100.0% 95.4%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 43.0 3.93e-01 92.3% 83.8%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 44.0 3.96e-01 96.2% 100.0%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.54e-01 100.0% 91.0%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.52e-01 100.0% 48.5%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.53 43.0 3.87e-01 96.2% 96.2%
2zxdA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 38.0 3.21e-01 76.9% 72.5%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 44.0 3.55e-01 100.0% 80.7%
2icsA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.53 37.0 3.10e-01 76.9% 85.1%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.23e-01 96.2% 96.9%
6c3mA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 36.0 2.73e-01 75.0% 60.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 6.62e-01 88.5% 94.5%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 67.0 3.75e-01 94.2% 8.6%
5054668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.33e-01 90.4% 97.8%
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 64.0 4.82e-01 100.0% 49.2%
3783617 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.74 60.0 5.22e-01 90.4% 98.8%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.48e-01 82.7% 94.5%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.72 58.0 5.77e-01 90.4% 94.5%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.69e-01 90.4% 98.2%
4032729 4.1.1.168 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2187 0.72 58.0 5.66e-01 90.4% 100.0%
3592540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.58e-01 92.3% 91.7%
3504834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.62e-01 92.3% 98.3%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.70 58.0 5.45e-01 94.2% 80.0%
3952707 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.62e-01 100.0% 74.6%
3347851 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 55.0 4.98e-01 86.5% 71.4%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.70 58.0 5.48e-01 96.2% 83.1%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.21e-01 90.4% 76.9%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.69 58.0 5.44e-01 96.2% 83.1%
2803945 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.69 56.0 4.17e-01 92.3% 39.7%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 57.0 5.68e-01 94.2% 92.7%
3636896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.04e-01 92.3% 85.3%
3708407 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 57.0 4.94e-01 96.2% 100.0%
2801583 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.69 53.0 4.11e-01 86.5% 91.7%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.69 57.0 5.01e-01 96.2% 73.8%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.97e-01 92.3% 98.7%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.68 57.0 5.36e-01 96.2% 83.1%
4611708 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.68 56.0 5.39e-01 94.2% 88.3%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 56.0 5.69e-01 92.3% 100.0%
3189521 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 57.0 4.85e-01 94.2% 92.9%
3839849 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.68 56.0 5.31e-01 96.2% 86.2%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.68 56.0 5.45e-01 96.2% 90.0%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 56.0 5.13e-01 94.2% 71.4%
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.40e-01 90.4% 94.5%
3590784 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.68 55.0 5.23e-01 96.2% 83.1%
3801791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.22e-01 96.2% 87.7%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.67 55.0 5.19e-01 96.2% 83.1%
4993181 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 4.94e-01 100.0% 88.2%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.66 54.0 5.12e-01 96.2% 87.7%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.66 53.0 4.59e-01 92.3% 63.5%
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 51.0 3.96e-01 88.5% 78.3%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.15e-01 90.4% 87.3%
4989408 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 53.0 4.63e-01 100.0% 82.0%
5008254 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 52.0 4.87e-01 96.2% 100.0%
3772701 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.64 47.0 3.57e-01 82.7% 51.1%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 54.0 4.40e-01 96.2% 73.7%
4999166 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 54.0 4.82e-01 98.1% 98.7%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 52.0 4.30e-01 94.2% 70.5%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 50.0 5.13e-01 88.5% 96.0%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.62 46.0 4.56e-01 82.7% 94.5%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 4.26e-01 82.7% 89.2%
5046975 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.61 53.0 4.63e-01 98.1% 92.5%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.81e-01 100.0% 95.4%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 52.0 4.41e-01 98.1% 76.7%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 52.0 4.71e-01 96.2% 92.9%
3402020 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.61 48.0 3.53e-01 94.2% 33.3%
None — 0.60 44.0 3.61e-01 82.7% 66.7%
1807495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.77e-01 98.1% 100.0%
3234172 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.59 50.0 4.26e-01 98.1% 86.7%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 50.0 4.69e-01 96.2% 100.0%
3969204 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 49.0 4.45e-01 100.0% 96.0%
4210311 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.58 44.0 3.68e-01 90.4% 87.0%
933 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 42.0 3.39e-01 84.6% 65.5%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.57 42.0 3.93e-01 82.7% 71.4%
3972231 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 2.98e-01 78.8% 73.4%
4809304 302.3.1.1 ↗ a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein › LMWSLP_N 0.53 38.0 2.88e-01 80.8% 59.6%
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.53 37.0 3.41e-01 80.8% 78.5%
3482448 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 42.0 3.01e-01 100.0% 58.3%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.50 39.0 3.07e-01 100.0% 69.7%