←Back to structures
gwf1_scaffold_41_prodigal-single.1__X__X__00330
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00330
Identity
- Kingdom:
- phage
Quality
76.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 78-194
Domain cluster:
rep: MT006240.1__QIG78296.1__BAAR0010003c01_00001__00001__D11-110
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.70 | 36.0 | 4.83e-01 | 83.8% | 96.7% |
| 4bumX00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.67 | 42.0 | 3.08e-01 | 71.8% | 26.1% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.65 | 59.0 | 5.49e-01 | 100.0% | 87.6% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.65 | 59.0 | 5.46e-01 | 100.0% | 87.8% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 36.0 | 4.25e-01 | 70.1% | 82.7% |
| 2zxkA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.61 | 56.0 | 4.26e-01 | 100.0% | 78.9% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.61 | 55.0 | 5.01e-01 | 100.0% | 88.4% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.61 | 53.0 | 5.15e-01 | 94.0% | 93.7% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.60 | 46.0 | 4.35e-01 | 96.6% | 67.9% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 47.0 | 4.89e-01 | 100.0% | 96.4% |
| 4puxA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 45.0 | 4.11e-01 | 86.3% | 88.5% |
| 2lgnA00 | 2.60.40.2850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 28.0 | 3.50e-01 | 74.4% | 80.3% |
| 5nz7A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.56 | 44.0 | 3.17e-01 | 83.8% | 73.3% |
| 3wirA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.56 | 45.0 | 3.45e-01 | 85.5% | 95.3% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 44.0 | 3.36e-01 | 84.6% | 99.3% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 35.0 | 4.18e-01 | 94.9% | 100.0% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 32.0 | 3.39e-01 | 93.2% | 61.9% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.54 | 46.0 | 4.37e-01 | 90.6% | 96.3% |
| 3ke6A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 36.0 | 3.52e-01 | 81.2% | 60.6% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 36.0 | 3.62e-01 | 87.2% | 65.8% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 48.0 | 4.35e-01 | 98.3% | 80.3% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 35.0 | 3.56e-01 | 87.2% | 65.0% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 34.0 | 3.70e-01 | 93.2% | 77.7% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 42.0 | 3.16e-01 | 85.5% | 67.2% |
| 3g7gH00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 42.0 | 3.90e-01 | 88.0% | 88.2% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.52 | 41.0 | 4.17e-01 | 83.8% | 96.5% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 28.0 | 3.27e-01 | 82.1% | 73.8% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 3.87e-01 | 88.0% | 84.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3399293 | 79.1.1.23 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 | 0.71 | 40.0 | 4.31e-01 | 76.9% | 64.1% |
| 3326913 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.64 | 44.0 | 3.43e-01 | 70.9% | 90.4% |
| 3645309 | 4099.1.1.27 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 | 0.63 | 46.0 | 5.05e-01 | 95.7% | 94.7% |
| 3830571 | 844.1.1.5 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 | 0.60 | 53.0 | 4.36e-01 | 94.9% | 86.6% |
| 1680012 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.59 | 47.0 | 3.33e-01 | 84.6% | 55.6% |
| 3186949 | 331.3.1.46 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 | 0.59 | 44.0 | 3.74e-01 | 78.6% | 54.2% |
| 3701925 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.58 | 40.0 | 3.99e-01 | 83.8% | 67.5% |
| 4011172 | 331.3.1.46 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 | 0.58 | 47.0 | 3.97e-01 | 83.8% | 56.8% |
| 2717534 | 12.3.1.31 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YgjK_N | 0.57 | 43.0 | 3.23e-01 | 79.5% | 39.6% |
| 3821615 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.57 | 51.0 | 4.43e-01 | 100.0% | 93.4% |
| 3183304 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 50.0 | 4.68e-01 | 97.4% | 92.4% |
| 1933318 | 327.6.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin | 0.56 | 50.0 | 3.88e-01 | 98.3% | 81.7% |
| 4518550 | 327.6.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin | 0.55 | 49.0 | 3.87e-01 | 98.3% | 88.7% |
| 3169657 | 4099.1.1.47 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 | 0.55 | 49.0 | 5.00e-01 | 100.0% | 100.0% |
| 5038030 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.54 | 48.0 | 3.72e-01 | 98.3% | 95.8% |
| 4405392 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.53 | 47.0 | 3.53e-01 | 98.3% | 79.7% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.53 | 40.0 | 4.03e-01 | 84.6% | 77.5% |
| 5051985 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 36.0 | 4.08e-01 | 75.2% | 92.2% |
| 4199197 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.52 | 41.0 | 3.44e-01 | 83.8% | 73.2% |
| 3716012 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 45.0 | 3.15e-01 | 94.9% | 94.9% |
| 5055761 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 47.0 | 4.42e-01 | 100.0% | 95.7% |
| 4958029 | 12.3.1.75 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N_bis | 0.52 | 41.0 | 3.31e-01 | 83.8% | 87.7% |
| 3249225 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.52 | 39.0 | 3.59e-01 | 82.9% | 59.4% |
| 3945391 | 331.3.1.19 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C | 0.52 | 45.0 | 3.74e-01 | 97.4% | 60.0% |
| 4560940 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.51 | 45.0 | 3.52e-01 | 97.4% | 93.3% |
| 3265666 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 39.0 | 2.61e-01 | 83.8% | 41.6% |
| 4205157 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 38.0 | 3.72e-01 | 82.9% | 72.0% |
| 3203691 | 11.1.1.667 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N | 0.50 | 40.0 | 3.66e-01 | 83.8% | 94.2% |
| 4600226 | 5.1.4.307 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 | 0.50 | 41.0 | 2.85e-01 | 91.5% | 41.1% |
| 4025141 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.50 | 46.0 | 3.81e-01 | 100.0% | 65.0% |