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gwf1_scaffold_41_prodigal-single.1__X__X__00336

Bact-Vir

gwf1_scaffold_41_prodigal-single.1__X__X__00336

Identity

Kingdom:
phage

Quality

83.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-35_99-223
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.59 33.0 4.02e-01 90.6% 82.9%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 28.0 3.41e-01 98.1% 70.6%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 34.0 3.61e-01 76.9% 64.5%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 28.0 3.22e-01 96.2% 60.7%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 33.0 3.49e-01 76.9% 63.0%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 25.0 3.26e-01 98.1% 77.0%
4eadA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 30.0 3.55e-01 92.5% 80.4%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 31.0 2.96e-01 77.5% 49.2%
6umqA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.52 34.0 3.89e-01 98.8% 90.4%
2i9cA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.52 27.0 3.16e-01 89.4% 69.4%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.51 35.0 3.71e-01 75.0% 79.1%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 31.0 3.15e-01 75.6% 61.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054557 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.73 41.0 5.32e-01 71.9% 96.7%
3236222 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.66 29.0 2.88e-01 98.8% 39.4%
3598051 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 33.0 3.71e-01 96.9% 68.8%
3703129 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 32.0 3.01e-01 99.4% 45.0%
5028018 5045.1.1.0 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A 0.50 42.0 3.46e-01 90.6% 63.3%
4025485 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.50 31.0 3.12e-01 96.9% 56.5%
D2 medium residues 36-98
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.69 58.0 4.56e-01 98.4% 45.3%
2bmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 49.0 3.56e-01 76.2% 36.2%
1yu9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 45.0 3.36e-01 71.4% 40.7%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.65 52.0 4.29e-01 88.9% 79.1%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.63 53.0 4.24e-01 98.4% 96.3%
3wp4A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.63 55.0 3.70e-01 96.8% 39.0%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 53.0 3.74e-01 96.8% 61.4%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.61 52.0 3.64e-01 95.2% 64.4%
2x8xX03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 42.0 3.83e-01 71.4% 98.8%
6he0A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.60 48.0 4.11e-01 90.5% 57.0%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.60 43.0 3.86e-01 88.9% 53.3%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 41.0 3.79e-01 73.0% 98.8%
1h6uA03 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.97e-01 87.3% 100.0%
2y27A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.58 46.0 4.05e-01 92.1% 59.2%
7r7eA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.57 46.0 3.89e-01 93.7% 52.1%
1ib8A01 3.30.300.70 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › RimP-like superfamily, N-terminal 0.57 47.0 4.30e-01 90.5% 73.5%
2rl8A00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.57 47.0 3.74e-01 98.4% 43.9%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 48.0 4.22e-01 93.7% 68.1%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 41.0 3.30e-01 79.4% 69.2%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.39e-01 90.5% 70.6%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 39.0 3.15e-01 73.0% 69.8%
4r0mA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 47.0 4.03e-01 96.8% 56.5%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.55 45.0 4.20e-01 95.2% 73.2%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.55 46.0 3.95e-01 98.4% 80.6%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 3.21e-01 93.7% 84.8%
3kxwA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 45.0 3.66e-01 93.7% 51.6%
6o6eB02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 41.0 3.51e-01 88.9% 49.5%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.54 34.0 3.71e-01 96.8% 78.8%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 46.0 3.57e-01 96.8% 46.4%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.36e-01 100.0% 90.0%
3tghA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 48.0 3.03e-01 100.0% 37.5%
4ys4A02 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.62e-01 98.4% 97.7%
1khbA01 3.40.449.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 0.53 41.0 3.01e-01 93.7% 75.3%
3bamA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.53 46.0 3.28e-01 100.0% 60.2%
6vhvA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 38.0 3.43e-01 93.7% 53.8%
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.52 40.0 3.88e-01 93.7% 75.0%
2ookA00 3.40.50.10600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SpoIIaa-like domains 0.52 42.0 3.33e-01 87.3% 46.4%
3n7zA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.40e-01 95.2% 78.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 42.0 3.33e-01 96.8% 44.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027367 2004.1.1.571 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, MMR_HSR1 0.72 49.0 3.40e-01 71.4% 30.0%
5034595 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.70 61.0 4.42e-01 96.8% 50.0%
4930534 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.64 56.0 4.16e-01 100.0% 49.7%
3599576 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.64 54.0 3.97e-01 96.8% 87.2%
5021698 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.63 52.0 3.58e-01 100.0% 32.8%
4944491 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.63 44.0 3.40e-01 73.0% 67.9%
3945514 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 3.53e-01 96.8% 93.0%
3301236 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.61 51.0 3.84e-01 96.8% 88.2%
3503356 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.61 45.0 3.88e-01 93.7% 51.6%
3700562 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.60 52.0 4.09e-01 98.4% 91.9%
3488689 508.1.1.0 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain 0.60 48.0 3.98e-01 95.2% 50.0%
3735941 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.60 50.0 4.57e-01 95.2% 70.6%
4978996 2004.11.1.0 a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain 0.59 50.0 3.52e-01 96.8% 83.3%
3997846 207.1.1.142 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6, LRR_8 0.59 48.0 2.83e-01 93.7% 11.9%
3743726 327.5.1.7 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 0.59 48.0 3.73e-01 92.1% 51.0%
4943019 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.58 46.0 4.51e-01 87.3% 84.3%
4958712 327.5.1.3 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 0.58 48.0 4.16e-01 92.1% 61.0%
4021181 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.58 46.0 3.65e-01 88.9% 50.0%
3966350 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.58 43.0 3.65e-01 90.5% 47.6%
4146797 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.57 45.0 3.68e-01 88.9% 56.2%
3277889 327.5.1.6 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like 0.57 47.0 3.95e-01 93.7% 53.9%
3436847 2.2.1.12 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › DUF7851 0.57 48.0 3.80e-01 90.5% 60.5%
4622549 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.57 46.0 3.70e-01 88.9% 57.6%
3545493 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.57 50.0 3.74e-01 98.4% 51.0%
4478632 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.57 51.0 3.11e-01 100.0% 32.7%
3710133 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.57 45.0 3.59e-01 95.2% 41.4%
4985935 7512.1.1.18 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.56 44.0 2.88e-01 85.7% 38.2%
4125352 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.56 45.0 3.60e-01 88.9% 58.5%
3968847 2486.1.1.8 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41,DUF3340 0.56 51.0 3.13e-01 100.0% 36.2%
3604419 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 44.0 3.60e-01 92.1% 52.6%
4985883 266.1.1.1 a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.55 47.0 3.36e-01 100.0% 37.1%
3947813 316.1.1.46 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SseB_C 0.55 45.0 3.92e-01 92.1% 59.0%
3938551 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.55 42.0 2.77e-01 82.5% 46.3%
5081027 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.54 43.0 4.06e-01 95.2% 72.5%
3357867 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 50.0 3.32e-01 100.0% 91.7%
3577103 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 47.0 3.88e-01 100.0% 77.5%
3938771 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.53 43.0 3.75e-01 90.5% 59.2%
4413560 3121.1.1.5 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_3 0.53 38.0 3.59e-01 74.6% 98.7%
4228205 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.53 45.0 3.55e-01 98.4% 47.1%
3705026 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.53 44.0 3.44e-01 93.7% 45.7%
4127161 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 3.83e-01 96.8% 76.0%
118104 2496.1.1.4 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › SpoIIAA-like 0.51 42.0 3.41e-01 93.7% 47.5%
3329729 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.51 42.0 3.30e-01 95.2% 46.9%
3959726 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 42.0 2.86e-01 96.8% 32.5%
3401220 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.51 43.0 3.45e-01 95.2% 50.4%
5037577 4961.1.1.1 a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.50 42.0 3.68e-01 92.1% 92.6%
3924166 7579.1.1.1 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.50 44.0 2.55e-01 98.4% 14.1%