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gwf1_scaffold_41_prodigal-single.1__X__X__00376
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00376
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b1xA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 46.0 | 3.73e-01 | 100.0% | 98.7% |
| 3qxfA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 44.0 | 2.90e-01 | 93.4% | 38.0% |
| 6vt2A01 | 2.60.40.4140 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 41.0 | 3.59e-01 | 85.5% | 72.6% |
| 4gzcA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 3.61e-01 | 93.4% | 52.3% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.52 | 35.0 | 3.78e-01 | 78.9% | 84.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4086511 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.59 | 42.0 | 3.74e-01 | 100.0% | 51.8% |
| 4992098 | 1075.3.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold | 0.58 | 41.0 | 2.87e-01 | 73.7% | 87.5% |
| 3562527 | 386.1.1.358 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 | 0.57 | 38.0 | 4.13e-01 | 90.8% | 86.7% |
| 3216582 | 304.9.1.99 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29396 | 0.55 | 48.0 | 4.23e-01 | 97.4% | 88.2% |
| 3963812 | 3170.1.1.0 ↗ | a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 | 0.53 | 44.0 | 3.91e-01 | 92.1% | 62.7% |
| 4270868 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.52 | 43.0 | 3.21e-01 | 94.7% | 41.0% |
| 4118933 | 4952.1.1.2 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic | 0.50 | 40.0 | 3.52e-01 | 86.8% | 84.3% |
| 3223663 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 39.0 | 3.32e-01 | 86.8% | 66.7% |
| 3940876 | 708.1.2.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › RIG-I_C-RD | 0.50 | 44.0 | 3.47e-01 | 100.0% | 73.3% |
| 3257948 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.50 | 33.0 | 3.52e-01 | 98.7% | 76.5% |