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gwf1_scaffold_41_prodigal-single.1__X__X__00413
Bact-Virgwf1_scaffold_41_prodigal-single.1__X__X__00413
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-181
Domain cluster:
rep: NC_031927.1__YP_009323164.1__BOW86_gp226__00231__D8-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04991.20 best | LicD | 43.2 | 7.00e-11 | 83.0% | 56.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wqkA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.77 | 56.0 | 5.65e-01 | 92.0% | 74.3% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.70 | 57.0 | 5.52e-01 | 91.5% | 77.6% |
| 2m6nA00 | 2.20.25.20 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 16.0 | 3.05e-01 | 79.5% | 78.3% |
| 3wfoA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 44.0 | 4.68e-01 | 88.6% | 87.9% |
| 2h4oA00 | 6.20.120.10 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 17.0 | 2.66e-01 | 73.3% | 62.9% |
| 6p8uA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 42.0 | 4.57e-01 | 100.0% | 100.0% |
| 1xovA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 18.0 | 2.78e-01 | 73.9% | 75.0% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3521617 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.82 | 71.0 | 6.54e-01 | 96.6% | 73.0% |
| 4217299 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.82 | 68.0 | 6.10e-01 | 98.9% | 64.3% |
| 3164515 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.82 | 77.0 | 7.39e-01 | 97.7% | 90.3% |
| 3989392 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.82 | 76.0 | 6.54e-01 | 96.6% | 94.1% |
| 3782486 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.81 | 73.0 | 6.65e-01 | 93.8% | 82.2% |
| None | — | 0.81 | 68.0 | 6.30e-01 | 98.9% | 70.3% | |
| 3174305 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.81 | 76.0 | 5.44e-01 | 98.9% | 53.5% |
| 3175510 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.81 | 77.0 | 6.57e-01 | 100.0% | 79.6% |
| 3786092 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.81 | 76.0 | 5.88e-01 | 99.4% | 56.3% |
| 3788678 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.81 | 76.0 | 6.24e-01 | 99.4% | 70.3% |
| 4954405 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.81 | 77.0 | 6.91e-01 | 100.0% | 94.8% |
| 3789145 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.81 | 75.0 | 5.81e-01 | 97.7% | 53.3% |
| 3695136 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 77.0 | 6.86e-01 | 100.0% | 85.8% |
| 3987477 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 74.0 | 6.33e-01 | 97.7% | 90.3% |
| 3787843 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 76.0 | 5.68e-01 | 99.4% | 47.4% |
| 3788383 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 76.0 | 5.47e-01 | 100.0% | 42.7% |
| 3788241 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 76.0 | 5.43e-01 | 100.0% | 72.8% |
| 3987679 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 74.0 | 6.87e-01 | 97.7% | 95.8% |
| 4959743 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.80 | 54.0 | 5.30e-01 | 89.8% | 63.7% |
| 4954358 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 73.0 | 6.07e-01 | 96.0% | 82.5% |
| 3518768 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 68.0 | 6.41e-01 | 95.5% | 75.2% |
| 3631215 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.79 | 67.0 | 6.36e-01 | 88.1% | 81.0% |
| 3701084 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.78 | 66.0 | 6.48e-01 | 97.7% | 82.5% |
| 3550487 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.78 | 71.0 | 6.60e-01 | 100.0% | 78.6% |
| 3585227 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.78 | 68.0 | 6.14e-01 | 95.5% | 69.4% |
| 3242972 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.78 | 64.0 | 6.73e-01 | 92.6% | 94.4% |
| 3613704 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.77 | 70.0 | 6.31e-01 | 95.5% | 82.1% |
| 4122066 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.77 | 55.0 | 5.88e-01 | 92.6% | 84.0% |
| 3238463 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.77 | 69.0 | 6.49e-01 | 98.9% | 80.5% |
| 4999426 | 316.1.1.85 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_5 | 0.76 | 62.0 | 5.58e-01 | 100.0% | 63.4% |
| 5058624 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.76 | 56.0 | 6.24e-01 | 89.2% | 95.0% |
| 3389408 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.76 | 69.0 | 6.57e-01 | 100.0% | 84.5% |
| 3606375 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.75 | 71.0 | 6.26e-01 | 100.0% | 88.3% |
| 3710911 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.73 | 65.0 | 6.13e-01 | 94.3% | 92.9% |
| 5078154 | 316.2.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like | 0.73 | 37.0 | 4.13e-01 | 88.1% | 60.7% |
| 5063941 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.70 | 59.0 | 5.33e-01 | 98.9% | 66.4% |
| 3625467 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.70 | 58.0 | 6.15e-01 | 92.0% | 97.4% |
| 4928558 | 316.2.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like | 0.68 | 35.0 | 3.76e-01 | 81.2% | 56.0% |
| 3204361 | 316.1.1.63 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF7582 | 0.68 | 47.0 | 4.53e-01 | 93.2% | 62.3% |
| 3951732 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.67 | 57.0 | 4.84e-01 | 98.3% | 56.1% |
| 3588123 | 316.1.1.48 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG | 0.66 | 39.0 | 4.75e-01 | 76.1% | 88.7% |
| 4940280 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 58.0 | 5.02e-01 | 100.0% | 63.4% |
| 4127878 | 316.1.1.48 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG | 0.65 | 38.0 | 4.60e-01 | 75.6% | 85.8% |
| 4940865 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 47.0 | 4.76e-01 | 93.2% | 79.4% |
| 4388749 | 316.1.1.48 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG | 0.61 | 37.0 | 4.38e-01 | 75.6% | 88.3% |
| 3567156 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 47.0 | 4.34e-01 | 93.8% | 90.7% |
| 5049640 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 20.0 | 2.78e-01 | 76.1% | 68.4% |
| 3623133 | 316.1.1.10 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap | 0.52 | 48.0 | 4.22e-01 | 100.0% | 89.4% |
| 4626545 | 523.1.1.1 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C | 0.51 | 27.0 | 3.55e-01 | 70.5% | 93.5% |
| 3764706 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 46.0 | 4.13e-01 | 100.0% | 92.0% |