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gwf2_scaffold_96_prodigal-single.1__X__X__00009

Bact-Vir

gwf2_scaffold_96_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

91.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 34.0 3.41e-01 75.7% 50.6%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 32.0 3.31e-01 100.0% 58.6%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.54 47.0 3.86e-01 98.6% 95.1%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 37.0 2.92e-01 85.1% 33.5%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 42.0 4.09e-01 95.9% 77.5%
2gutA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.54 34.0 3.41e-01 83.8% 61.0%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.89e-01 70.3% 96.9%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.53 38.0 3.67e-01 95.9% 64.8%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 33.0 3.62e-01 90.5% 87.0%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 37.0 3.70e-01 93.2% 73.1%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.52 35.0 3.15e-01 70.3% 75.5%
3hx4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 44.0 3.28e-01 98.6% 38.5%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 32.0 3.56e-01 95.9% 95.7%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 42.0 2.87e-01 93.2% 33.8%
3q8gA01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.51 32.0 3.18e-01 70.3% 58.2%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.53e-01 86.5% 75.8%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.31e-01 78.4% 76.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3567672 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.83 42.0 5.60e-01 86.5% 92.5%
3441581 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.61 39.0 4.01e-01 78.4% 67.1%
3972698 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 35.0 3.41e-01 86.5% 50.6%
4947850 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.79e-01 79.7% 98.1%
3219209 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 39.0 4.02e-01 97.3% 77.1%
None — 0.56 44.0 2.79e-01 86.5% 19.8%
3624784 7579.1.1.70 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.56 48.0 3.17e-01 98.6% 48.4%
3215991 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 38.0 3.98e-01 97.3% 81.5%
4018084 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 40.0 4.17e-01 86.5% 84.3%
3356218 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 40.0 2.71e-01 81.1% 90.9%
3808658 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.54 38.0 3.55e-01 74.3% 72.6%
185824 103.4.1.3 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.54 34.0 3.41e-01 83.8% 61.0%
3947986 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.54 36.0 3.82e-01 100.0% 85.0%
5036110 2002.1.1.452 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C 0.53 41.0 2.60e-01 95.9% 16.3%
3495156 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.53 38.0 3.67e-01 98.6% 67.1%
3700656 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 41.0 3.70e-01 91.9% 77.1%
3517520 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.50 38.0 4.14e-01 82.4% 100.0%
3707894 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 34.0 3.61e-01 86.5% 80.0%