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gwf2_scaffold_96_prodigal-single.1__X__X__00052
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00052
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-73_115-143
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kogA00 | 1.20.5.110 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 36.0 | 2.85e-01 | 98.2% | 25.0% |
| 2gumA02 | 1.20.5.1890 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 42.0 | 3.45e-01 | 78.6% | 52.5% |
| 4cs9C00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.55 | 41.0 | 2.95e-01 | 100.0% | 27.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279205 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.66 | 58.0 | 3.89e-01 | 100.0% | 72.3% |
| 3658440 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.64 | 34.0 | 3.48e-01 | 91.1% | 50.9% |
| 3496221 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 41.0 | 4.01e-01 | 94.6% | 68.3% |
| 3730814 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.53 | 45.0 | 2.59e-01 | 91.1% | 45.9% |
| 3370613 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.53 | 45.0 | 2.89e-01 | 100.0% | 33.1% |
D2
medium
residues 144-195_295-348
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xjvA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.70 | 65.0 | 5.05e-01 | 100.0% | 72.2% |
| 2cb9A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.68 | 61.0 | 5.16e-01 | 100.0% | 59.8% |
| 3regA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 46.0 | 3.99e-01 | 100.0% | 53.2% |
| 1a2oA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 49.0 | 4.59e-01 | 98.1% | 97.0% |
| 1z9bA01 | 3.40.50.10050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor IF- 2, domain 3 | 0.55 | 31.0 | 3.39e-01 | 100.0% | 65.5% |
| 4wxmB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 47.0 | 4.46e-01 | 99.1% | 93.8% |
| 3hdvB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 47.0 | 4.52e-01 | 100.0% | 96.8% |
| 1rkbA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.89e-01 | 100.0% | 94.8% |
| 3i42A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 45.0 | 4.42e-01 | 98.1% | 100.0% |
| 5tqjA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 45.0 | 4.29e-01 | 98.1% | 96.8% |
| 3lufB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 44.0 | 4.23e-01 | 97.2% | 98.4% |
| 3gl9A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 45.0 | 4.33e-01 | 98.1% | 99.2% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 44.0 | 3.90e-01 | 98.1% | 79.5% |
| 7pthC01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.51 | 43.0 | 2.95e-01 | 100.0% | 54.2% |
| 4kxwA03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 44.0 | 4.13e-01 | 98.1% | 91.7% |
| 2gi4A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 43.0 | 3.84e-01 | 98.1% | 97.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026584 | 7579.1.1.102 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Hydrolase_4 | 0.80 | 75.0 | 5.04e-01 | 100.0% | 52.6% |
| 3787602 | 7579.1.1.25 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FSH1 | 0.58 | 51.0 | 3.92e-01 | 100.0% | 97.6% |
| None | — | 0.57 | 43.0 | 3.08e-01 | 81.1% | 40.0% | |
| 4498648 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.56 | 49.0 | 3.78e-01 | 100.0% | 61.9% |
| 3523199 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.55 | 47.0 | 3.17e-01 | 99.1% | 47.6% |
| 3465718 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.54 | 41.0 | 2.80e-01 | 80.2% | 41.8% |
| 4811709 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.52 | 39.0 | 3.20e-01 | 100.0% | 43.5% |
| 4557051 | 2495.1.1.2 ↗ | a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N_1 | 0.51 | 38.0 | 3.94e-01 | 96.2% | 84.0% |
| 2330577 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.51 | 34.0 | 3.36e-01 | 100.0% | 62.1% |
| 3303047 | 7579.1.1.16 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Palm_thioest | 0.50 | 43.0 | 3.56e-01 | 94.3% | 64.2% |
D3
medium
residues 198-268
Domain cluster:
representative