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gwf2_scaffold_96_prodigal-single.1__X__X__00055
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
66.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 658-758
Domain cluster:
rep: IMGVR_UViG_3300027933_000059-3300027933-Ga0208549_1032454__D170-252
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 34.0 | 3.83e-01 | 72.3% | 77.2% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 30.0 | 3.33e-01 | 79.2% | 66.3% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 38.0 | 2.79e-01 | 73.3% | 93.7% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.54 | 43.0 | 3.91e-01 | 87.1% | 80.7% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 32.0 | 3.67e-01 | 78.2% | 88.4% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 38.0 | 4.17e-01 | 80.2% | 98.7% |
| 1rwhA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 38.0 | 3.66e-01 | 79.2% | 83.3% |
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.50 | 28.0 | 3.35e-01 | 84.2% | 83.1% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.50 | 36.0 | 3.91e-01 | 86.1% | 91.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2323922 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.60 | 34.0 | 3.95e-01 | 79.2% | 79.4% |
| 4947239 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.56 | 39.0 | 3.92e-01 | 100.0% | 72.0% |
| 3263502 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.56 | 36.0 | 3.76e-01 | 93.1% | 72.2% |
| 2664854 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.56 | 31.0 | 3.11e-01 | 79.2% | 52.0% |
| 4023922 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.54 | 28.0 | 2.55e-01 | 79.2% | 35.0% |
| 3323984 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.50 | 28.0 | 2.31e-01 | 79.2% | 27.6% |
| 3234953 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.50 | 41.0 | 3.33e-01 | 93.1% | 70.2% |
D2
medium
residues 1-112
D3
medium
residues 500-657_763-775
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 32.0 | 3.58e-01 | 86.0% | 70.2% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 30.0 | 3.38e-01 | 85.4% | 67.2% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 30.0 | 3.47e-01 | 86.5% | 71.5% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 30.0 | 3.28e-01 | 88.3% | 62.7% |
| 3pg7A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 33.0 | 3.97e-01 | 98.8% | 97.3% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 31.0 | 3.33e-01 | 88.3% | 67.4% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 30.0 | 3.37e-01 | 87.7% | 72.2% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 28.0 | 3.20e-01 | 86.0% | 70.2% |
| 2gxfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 32.0 | 3.81e-01 | 79.5% | 93.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3468093 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.57 | 29.0 | 3.61e-01 | 88.3% | 80.6% |
| 3470047 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.55 | 26.0 | 3.51e-01 | 91.2% | 87.1% |
| 3281821 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 32.0 | 3.62e-01 | 86.0% | 74.6% |
| 3969379 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 31.0 | 3.26e-01 | 88.3% | 63.3% |
| 1562270 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 28.0 | 3.21e-01 | 86.0% | 70.2% |
| 3418771 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.51 | 33.0 | 3.74e-01 | 84.8% | 85.4% |