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gwf2_scaffold_96_prodigal-single.1__X__X__00125
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00125
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-133
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_100001521__D4-131
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06868.17 best | DUF1257 | 37.0 | 4.60e-09 | 84.0% | 97.1% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.79 | 30.0 | 3.53e-01 | 100.0% | 48.9% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.69 | 31.0 | 3.80e-01 | 100.0% | 65.1% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 29.0 | 3.84e-01 | 71.0% | 81.2% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 30.0 | 3.91e-01 | 74.8% | 84.1% |
| 3madA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 36.0 | 3.68e-01 | 79.4% | 58.8% |
| 5tvoB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.60 | 27.0 | 3.75e-01 | 100.0% | 89.8% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 36.0 | 3.64e-01 | 79.4% | 59.5% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 28.0 | 3.04e-01 | 75.6% | 50.0% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 29.0 | 3.69e-01 | 80.2% | 84.5% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 49.0 | 3.93e-01 | 90.8% | 87.1% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 26.0 | 3.12e-01 | 74.8% | 62.1% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 28.0 | 3.41e-01 | 75.6% | 71.6% |
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.56 | 39.0 | 3.63e-01 | 100.0% | 57.3% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.55 | 31.0 | 3.98e-01 | 88.5% | 96.0% |
| 4obuA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 38.0 | 3.13e-01 | 84.7% | 39.7% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.55 | 41.0 | 4.30e-01 | 90.1% | 85.6% |
| 3oxnA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 39.0 | 4.16e-01 | 75.6% | 89.6% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.52 | 27.0 | 2.81e-01 | 80.9% | 52.8% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 3.63e-01 | 86.3% | 96.4% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.51 | 27.0 | 3.24e-01 | 70.2% | 79.7% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 39.0 | 3.62e-01 | 82.4% | 88.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986894 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.83 | 27.0 | 4.02e-01 | 100.0% | 65.0% |
| 4936721 | 304.24.1.37 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C | 0.79 | 25.0 | 3.61e-01 | 100.0% | 58.5% |
| 4433614 | 304.7.1.27 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF27210 | 0.75 | 30.0 | 3.46e-01 | 100.0% | 49.5% |
| 5060689 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.74 | 26.0 | 3.73e-01 | 100.0% | 66.7% |
| 4555558 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.72 | 32.0 | 4.24e-01 | 100.0% | 74.7% |
| 4955075 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.69 | 25.0 | 3.32e-01 | 100.0% | 57.5% |
| 3968428 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.63 | 30.0 | 3.59e-01 | 76.3% | 64.4% |
| 4129483 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.61 | 33.0 | 3.73e-01 | 76.3% | 68.4% |
| 4191626 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.60 | 29.0 | 3.48e-01 | 75.6% | 68.8% |
| 4986893 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.56 | 30.0 | 3.93e-01 | 100.0% | 92.0% |
| 223786 | 304.48.1.16 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_4 | 0.56 | 48.0 | 3.56e-01 | 91.6% | 87.3% |
| 4945580 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.56 | 30.0 | 3.82e-01 | 100.0% | 87.3% |
| 4946195 | 304.120.1.19 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › THUMP | 0.56 | 27.0 | 3.55e-01 | 90.1% | 87.7% |
| 3970617 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.55 | 29.0 | 3.89e-01 | 100.0% | 92.0% |
| 4987072 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.55 | 29.0 | 3.76e-01 | 100.0% | 87.3% |
| 4064436 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.55 | 28.0 | 3.00e-01 | 90.1% | 54.5% |
| 5012030 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.55 | 29.0 | 3.92e-01 | 100.0% | 97.1% |
| 4932631 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.55 | 27.0 | 2.99e-01 | 72.5% | 56.3% |
| 5073129 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.54 | 29.0 | 3.77e-01 | 100.0% | 92.0% |
| 5037411 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.54 | 30.0 | 3.40e-01 | 71.0% | 70.0% |
| 4107133 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.53 | 27.0 | 3.44e-01 | 90.1% | 84.0% |
| 1231422 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.51 | 26.0 | 2.84e-01 | 80.2% | 54.6% |
| 3613194 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 34.0 | 3.28e-01 | 84.0% | 57.4% |
| 4927356 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.50 | 29.0 | 3.23e-01 | 91.6% | 71.4% |