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gwf2_scaffold_96_prodigal-single.1__X__X__00160
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00160
Identity
- Kingdom:
- phage
Quality
52.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-196
D2
high
residues 253-347
Domain cluster:
rep: gwf2_scaffold_96_prodigal-single.1__X__X__00229__D393-489
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.79 | 71.0 | 6.95e-01 | 98.9% | 91.2% |
| 5cq2A02 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 31.0 | 4.37e-01 | 74.7% | 97.7% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 52.0 | 4.10e-01 | 96.8% | 83.7% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 40.0 | 3.77e-01 | 70.5% | 90.9% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.59 | 32.0 | 4.02e-01 | 80.0% | 94.2% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.57 | 41.0 | 3.64e-01 | 76.8% | 89.0% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 32.0 | 3.89e-01 | 83.2% | 92.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.56 | 44.0 | 4.21e-01 | 84.2% | 95.4% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 38.0 | 3.44e-01 | 70.5% | 59.8% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.54 | 37.0 | 3.75e-01 | 70.5% | 95.7% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.53 | 45.0 | 4.34e-01 | 91.6% | 100.0% |
| 5umbA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 39.0 | 3.23e-01 | 81.1% | 77.9% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.52 | 38.0 | 3.74e-01 | 78.9% | 93.4% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.68e-01 | 75.8% | 75.8% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.97e-01 | 90.5% | 94.2% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.51 | 39.0 | 3.27e-01 | 81.1% | 67.9% |
| 4ci8A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.85e-01 | 86.3% | 79.5% |
| 7xr9E01 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 40.0 | 3.24e-01 | 87.4% | 64.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587270 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.85 | 75.0 | 6.96e-01 | 98.9% | 77.4% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.82 | 73.0 | 7.52e-01 | 96.8% | 100.0% |
| 3942532 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.80 | 67.0 | 7.02e-01 | 95.8% | 100.0% |
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.80 | 73.0 | 7.22e-01 | 100.0% | 94.0% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.79 | 71.0 | 7.05e-01 | 98.9% | 93.0% |
| 3748902 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.68 | 34.0 | 3.94e-01 | 73.7% | 65.7% |
| 3056107 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 56.0 | 5.48e-01 | 92.6% | 91.4% |
| 5044949 | 241.9.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like | 0.62 | 43.0 | 4.00e-01 | 72.6% | 86.7% |
| 5037381 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.61 | 32.0 | 4.08e-01 | 80.0% | 94.0% |
| 3258354 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.56 | 44.0 | 3.08e-01 | 86.3% | 68.2% |
| 3348808 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.56 | 42.0 | 2.80e-01 | 81.1% | 66.3% |
| 3239066 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.55 | 42.0 | 2.73e-01 | 81.1% | 40.5% |
| 3598645 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.54 | 41.0 | 2.72e-01 | 82.1% | 65.8% |
| 3702508 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 40.0 | 3.22e-01 | 77.9% | 88.2% |
| 3931922 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 37.0 | 2.51e-01 | 71.6% | 50.1% |
| 3889019 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 39.0 | 3.24e-01 | 78.9% | 89.7% |
| 3313424 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.53 | 39.0 | 3.22e-01 | 78.9% | 80.0% |
| None | — | 0.51 | 35.0 | 2.09e-01 | 70.5% | 10.5% | |
| 3584345 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.51 | 32.0 | 2.88e-01 | 76.8% | 45.2% |
| 3742193 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.51 | 36.0 | 2.54e-01 | 76.8% | 70.0% |
| 4073600 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.50 | 41.0 | 4.00e-01 | 91.6% | 89.0% |
D3
medium
residues 230-252_351-456
D4
medium
residues 457-542