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gwf2_scaffold_96_prodigal-single.1__X__X__00192
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00192
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-49_153-194
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.77 | 71.0 | 5.43e-01 | 100.0% | 94.4% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.68 | 32.0 | 3.82e-01 | 98.9% | 66.1% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 33.0 | 2.76e-01 | 100.0% | 29.2% |
| 6rtqA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.59 | 30.0 | 2.68e-01 | 98.9% | 31.6% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.56 | 28.0 | 3.59e-01 | 97.8% | 83.0% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 35.0 | 4.04e-01 | 98.9% | 96.8% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 32.0 | 3.54e-01 | 78.0% | 74.3% |
| 2je8B05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 33.0 | 3.37e-01 | 100.0% | 64.0% |
| 6ezmA01 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.52 | 41.0 | 3.90e-01 | 84.6% | 96.3% |
| 3danA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 38.0 | 2.44e-01 | 78.0% | 72.1% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 40.0 | 3.14e-01 | 87.9% | 96.4% |
| 2f5gA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.51 | 42.0 | 3.78e-01 | 91.2% | 76.9% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 40.0 | 3.38e-01 | 87.9% | 91.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 36.0 | 3.12e-01 | 85.7% | 46.9% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 31.0 | 2.74e-01 | 100.0% | 43.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973595 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.86 | 81.0 | 5.74e-01 | 100.0% | 84.5% |
| 5023993 | 210.1.1.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 | 0.77 | 71.0 | 5.26e-01 | 100.0% | 83.2% |
| 3608102 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 29.0 | 3.33e-01 | 97.8% | 54.3% |
| 5018714 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 31.0 | 3.75e-01 | 100.0% | 70.0% |
| 3393619 | 284.4.1.2 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 | 0.64 | 29.0 | 3.82e-01 | 100.0% | 78.0% |
| 3576754 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.63 | 32.0 | 3.00e-01 | 100.0% | 38.2% |
| 3534592 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 31.0 | 3.90e-01 | 100.0% | 81.8% |
| 3679206 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.55 | 44.0 | 2.90e-01 | 89.0% | 93.0% |
| 3391461 | 3308.2.1.1 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD | 0.52 | 38.0 | 4.19e-01 | 97.8% | 94.7% |
| 3908966 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.51 | 36.0 | 3.16e-01 | 100.0% | 48.9% |
| 3998954 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.50 | 38.0 | 3.45e-01 | 83.5% | 64.6% |
D2
medium
residues 50-152
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 40.0 | 4.03e-01 | 90.3% | 56.6% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.66 | 36.0 | 2.90e-01 | 90.3% | 26.2% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 45.0 | 4.10e-01 | 89.3% | 55.6% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.59 | 42.0 | 4.39e-01 | 73.8% | 89.4% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.58 | 24.0 | 3.53e-01 | 89.3% | 97.4% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 36.0 | 4.15e-01 | 85.4% | 86.7% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.57 | 32.0 | 3.03e-01 | 91.3% | 41.9% |
| 1xi7A00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.54 | 27.0 | 3.53e-01 | 87.4% | 100.0% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.53 | 36.0 | 3.98e-01 | 72.8% | 91.1% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.52 | 34.0 | 3.09e-01 | 73.8% | 50.4% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 41.0 | 4.15e-01 | 89.3% | 84.2% |
| 4bzyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.42e-01 | 100.0% | 62.8% |
| 2dbuB00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.52 | 42.0 | 3.50e-01 | 90.3% | 50.5% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 34.0 | 3.24e-01 | 72.8% | 57.1% |
| 4f3nA00 | 3.40.50.12710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 2.83e-01 | 87.4% | 84.2% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.51 | 27.0 | 3.22e-01 | 86.4% | 78.1% |
| 4akgA04 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.51 | 40.0 | 3.48e-01 | 82.5% | 90.4% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.82e-01 | 99.0% | 66.3% |
| 6me6B02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 37.0 | 2.74e-01 | 77.7% | 79.3% |
| 1s9qA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 43.0 | 3.40e-01 | 96.1% | 80.8% |
| 1r8oB01 | 2.30.30.480 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 25.0 | 2.97e-01 | 100.0% | 69.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054557 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.72 | 50.0 | 5.31e-01 | 71.8% | 92.2% |
| 4362265 | 101.28.1.1 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC | 0.67 | 43.0 | 4.29e-01 | 72.8% | 63.8% |
| 3350187 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.66 | 61.0 | 4.77e-01 | 100.0% | 81.0% |
| 3961965 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.63 | 31.0 | 3.77e-01 | 78.6% | 72.3% |
| 3661102 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.60 | 25.0 | 3.41e-01 | 90.3% | 72.7% |
| 3960054 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.59 | 41.0 | 3.25e-01 | 72.8% | 67.7% |
| 4231809 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 42.0 | 2.78e-01 | 76.7% | 50.7% |
| 3265125 | 604.22.1.1 ↗ | alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N | 0.58 | 42.0 | 3.92e-01 | 87.4% | 61.6% |
| 3605879 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.56 | 25.0 | 3.29e-01 | 98.1% | 84.4% |
| 3587045 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.54 | 46.0 | 3.37e-01 | 95.1% | 75.0% |
| 3647341 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 39.0 | 3.61e-01 | 82.5% | 57.8% |
| 3721359 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.54 | 39.0 | 2.70e-01 | 77.7% | 89.7% |
| 3252540 | 5001.1.1.48 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Pex16 | 0.53 | 44.0 | 3.33e-01 | 92.2% | 76.1% |
| 3216714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 20.0 | 3.09e-01 | 75.7% | 100.0% |
| 4929550 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.51 | 28.0 | 3.30e-01 | 96.1% | 77.1% |
| 4048802 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.51 | 43.0 | 2.57e-01 | 97.1% | 29.2% |
| 3716884 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.50 | 43.0 | 2.89e-01 | 97.1% | 75.1% |
| 3415836 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.50 | 34.0 | 3.46e-01 | 93.2% | 69.5% |