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gwf2_scaffold_96_prodigal-single.1__X__X__00234

Bact-Vir

gwf2_scaffold_96_prodigal-single.1__X__X__00234

Identity

Kingdom:
phage

Quality

60.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-204
PDB
D2 medium residues 219-290_336-407
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gelB00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.75 67.0 5.94e-01 94.4% 90.4%
2c1lA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.75 64.0 5.75e-01 88.9% 79.8%
1byrA00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.74 65.0 6.39e-01 90.3% 86.2%
4urjD00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.73 65.0 6.02e-01 92.4% 84.5%
3sq3A01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.71 60.0 5.53e-01 89.6% 97.3%
3hsiA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.70 65.0 5.38e-01 97.9% 72.5%
7clgA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.69 64.0 5.72e-01 96.5% 80.0%
7e0mA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.69 63.0 6.29e-01 95.1% 100.0%
4ggjA00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.69 63.0 5.94e-01 94.4% 88.5%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 29.0 3.89e-01 97.9% 84.9%
4aybL00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.59 27.0 3.31e-01 99.3% 64.8%
4qjvA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 26.0 3.17e-01 99.3% 62.9%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 29.0 3.21e-01 99.3% 58.4%
1qe0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 52.0 4.11e-01 99.3% 64.5%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 27.0 3.11e-01 99.3% 59.4%
1je6A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 28.0 3.39e-01 99.3% 74.2%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 28.0 3.10e-01 99.3% 57.4%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 26.0 3.19e-01 99.3% 67.7%
1z7mC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 51.0 3.94e-01 100.0% 67.9%
3netB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 50.0 3.87e-01 100.0% 67.2%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 40.0 4.10e-01 100.0% 79.9%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 32.0 3.58e-01 99.3% 77.1%
2opkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 33.0 3.96e-01 100.0% 98.9%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 32.0 3.61e-01 99.3% 82.4%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3271099 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.84 79.0 6.51e-01 97.2% 84.3%
3722056 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.80 73.0 5.75e-01 95.8% 82.6%
4635994 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.78 72.0 5.92e-01 96.5% 79.2%
3497988 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.78 72.0 5.77e-01 97.2% 83.1%
3594526 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.76 67.0 5.35e-01 91.0% 66.0%
4954932 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.76 67.0 6.56e-01 93.8% 85.7%
3689911 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.75 66.0 5.16e-01 91.7% 60.4%
3864409 300.1.1.4 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FAM83 0.75 67.0 6.19e-01 92.4% 86.9%
4423909 300.1.1.4 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FAM83 0.75 67.0 5.85e-01 92.4% 77.5%
3743918 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.75 65.0 5.26e-01 91.0% 62.7%
3226093 300.1.1.11 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.74 64.0 5.65e-01 89.6% 82.0%
4096200 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 66.0 6.53e-01 93.8% 88.0%
5058870 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 64.0 6.24e-01 88.9% 85.8%
3700951 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.74 71.0 5.73e-01 100.0% 82.8%
4932583 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 65.0 6.31e-01 91.0% 89.9%
5056736 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 65.0 6.36e-01 91.0% 86.5%
3946929 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 63.0 6.19e-01 88.2% 85.1%
3967506 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 64.0 5.23e-01 89.6% 68.3%
5077482 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 65.0 6.01e-01 91.0% 77.7%
4040753 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 66.0 6.12e-01 92.4% 90.2%
5016045 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 64.0 6.12e-01 95.1% 79.3%
3348982 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 64.0 5.10e-01 89.6% 68.2%
3263235 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 65.0 5.80e-01 92.4% 82.6%
3345295 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.74 70.0 5.40e-01 100.0% 76.8%
3844392 300.1.1.4 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FAM83 0.73 65.0 5.86e-01 91.7% 81.6%
5042576 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.73 63.0 6.26e-01 88.9% 88.0%
5059925 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.73 64.0 5.83e-01 91.0% 82.2%
4946828 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.73 63.0 6.25e-01 93.8% 86.0%
3243397 300.1.1.11 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.73 65.0 5.64e-01 92.4% 83.4%
3908644 300.1.1.11 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.73 69.0 5.69e-01 100.0% 77.9%
3562956 300.1.1.11 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.73 67.0 5.70e-01 96.5% 85.0%
4966181 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.73 65.0 5.95e-01 94.4% 89.6%
5025441 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.72 56.0 5.84e-01 87.5% 85.8%
3407967 300.1.1.11 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.72 65.0 5.48e-01 93.1% 77.7%
5014761 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.72 66.0 6.39e-01 94.4% 90.3%
3281162 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.72 63.0 5.92e-01 91.0% 80.6%
3255206 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.72 62.0 5.17e-01 89.6% 70.0%
3990155 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.72 65.0 5.61e-01 95.8% 75.3%
3282234 300.1.1.16 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc, PLDc_2 0.72 61.0 5.21e-01 88.9% 74.5%
5044984 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.72 68.0 6.50e-01 100.0% 88.7%
3983052 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.72 62.0 5.06e-01 91.0% 65.6%
3263583 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.71 61.0 5.38e-01 88.9% 78.5%
5001196 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.71 65.0 5.98e-01 95.1% 81.7%
4028274 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.70 65.0 5.81e-01 95.8% 78.4%
4970262 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.70 65.0 6.00e-01 95.8% 80.0%
5075820 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.70 64.0 6.04e-01 95.8% 82.4%
3593269 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.70 66.0 5.59e-01 97.2% 73.5%
3249675 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.70 65.0 5.84e-01 97.2% 76.8%
3209841 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.70 65.0 5.42e-01 97.2% 88.6%
4959974 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.70 57.0 5.70e-01 89.6% 84.1%
4358783 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.70 67.0 5.49e-01 100.0% 79.6%
4129187 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.69 66.0 4.69e-01 100.0% 85.0%
4187061 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.69 66.0 5.51e-01 100.0% 65.8%
4491670 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.68 65.0 5.70e-01 100.0% 70.6%
4979096 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.68 63.0 5.90e-01 100.0% 81.8%
4371205 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.68 64.0 5.40e-01 100.0% 63.1%
4352005 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.68 65.0 5.73e-01 100.0% 76.4%
4994788 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.66 56.0 5.45e-01 89.6% 82.5%
3382513 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.65 28.0 3.29e-01 99.3% 54.3%
3824912 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.65 29.0 3.76e-01 98.6% 73.8%
4195003 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.64 29.0 3.59e-01 99.3% 66.7%
4936622 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.62 28.0 3.40e-01 99.3% 63.2%
5035806 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.62 28.0 3.45e-01 99.3% 65.6%
4632598 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 29.0 3.20e-01 99.3% 55.8%
5004774 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.59 54.0 5.40e-01 97.2% 99.3%
4938975 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 28.0 3.31e-01 99.3% 64.6%
4941622 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.57 28.0 3.34e-01 99.3% 68.9%
4630306 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.57 51.0 3.75e-01 100.0% 69.4%
3492664 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 42.0 3.46e-01 84.0% 67.4%
3213036 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 41.0 3.09e-01 81.2% 64.5%
3583142 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 37.0 3.41e-01 73.6% 85.3%
D3 medium residues 291-335_408-424
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e1hA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 40.0 2.89e-01 91.9% 87.5%