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gwf2_scaffold_96_prodigal-single.1__X__X__00249
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00249
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-70_178-342
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00154.28 best | RecA_N | 102.7 | 3.30e-29 | 83.1% | 55.7% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.79 | 77.0 | 7.41e-01 | 100.0% | 91.5% |
| 8gjaD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 70.0 | 6.26e-01 | 100.0% | 91.1% |
| 3ewaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 70.0 | 6.45e-01 | 100.0% | 92.0% |
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 70.0 | 6.61e-01 | 100.0% | 95.2% |
| 2cvhA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 65.0 | 6.36e-01 | 97.0% | 95.3% |
| 8gj8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 65.0 | 5.94e-01 | 100.0% | 92.0% |
| 8dtpC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 62.0 | 5.66e-01 | 97.0% | 96.1% |
| 8db3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 59.0 | 5.91e-01 | 100.0% | 95.2% |
| 4wiaC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 60.0 | 5.76e-01 | 100.0% | 93.8% |
| 2dr3A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 59.0 | 5.64e-01 | 100.0% | 92.2% |
| 1cr2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 60.0 | 5.57e-01 | 100.0% | 88.3% |
| 4tl8F00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 57.0 | 5.61e-01 | 100.0% | 93.4% |
| 2w0mA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 57.0 | 5.53e-01 | 100.0% | 96.4% |
| 3vu9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 55.0 | 5.41e-01 | 97.0% | 92.6% |
| 5tshA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 55.0 | 4.90e-01 | 99.0% | 93.8% |
| 6eudA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 40.0 | 4.36e-01 | 74.1% | 98.8% |
| 1itxA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 47.0 | 3.87e-01 | 95.5% | 97.1% |
| 3bghB01 | 3.30.160.180 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain | 0.52 | 31.0 | 3.33e-01 | 90.5% | 67.8% |
| 1e9fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 4.28e-01 | 91.0% | 84.7% |
| 3ld9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 4.31e-01 | 91.5% | 89.3% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 47.0 | 3.86e-01 | 98.0% | 92.7% |
| 6mp7A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 46.0 | 3.91e-01 | 99.5% | 83.8% |
| 4finB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 46.0 | 4.26e-01 | 97.5% | 83.1% |
ECOD (83)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4450485 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.97 | 69.0 | 7.59e-01 | 81.1% | 85.9% |
| None | — | 0.89 | 88.0 | 7.77e-01 | 100.0% | 84.5% | |
| None | — | 0.89 | 87.0 | 7.53e-01 | 100.0% | 84.9% | |
| None | — | 0.89 | 87.0 | 7.64e-01 | 100.0% | 81.1% | |
| None | — | 0.89 | 87.0 | 7.52e-01 | 100.0% | 78.2% | |
| None | — | 0.89 | 87.0 | 7.74e-01 | 100.0% | 84.2% | |
| 4452602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 87.0 | 6.98e-01 | 100.0% | 64.6% |
| 4485228 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 87.0 | 6.90e-01 | 100.0% | 62.8% |
| None | — | 0.89 | 87.0 | 7.65e-01 | 100.0% | 82.6% | |
| None | — | 0.89 | 87.0 | 7.77e-01 | 100.0% | 85.8% | |
| None | — | 0.88 | 86.0 | 7.24e-01 | 100.0% | 74.1% | |
| 3830575 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.88 | 86.0 | 7.19e-01 | 100.0% | 72.9% |
| 3575142 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.88 | 67.0 | 6.33e-01 | 78.1% | 94.0% |
| 3382308 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.87 | 85.0 | 7.19e-01 | 100.0% | 82.0% |
| 3945420 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.83 | 80.0 | 7.18e-01 | 100.0% | 94.7% |
| 3256042 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.83 | 80.0 | 6.86e-01 | 100.0% | 86.4% |
| 4995730 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.79 | 76.0 | 6.77e-01 | 100.0% | 87.4% |
| 3714446 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.78 | 75.0 | 6.25e-01 | 100.0% | 95.9% |
| 3711706 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 74.0 | 6.48e-01 | 100.0% | 96.8% |
| 4994819 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.77 | 74.0 | 6.81e-01 | 100.0% | 88.0% |
| 3516066 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.76 | 74.0 | 6.35e-01 | 100.0% | 88.3% |
| 4946309 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.76 | 74.0 | 6.65e-01 | 100.0% | 87.3% |
| 3243390 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.76 | 74.0 | 6.48e-01 | 100.0% | 83.3% |
| 3597617 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 73.0 | 6.42e-01 | 100.0% | 85.0% |
| 3657857 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.76 | 73.0 | 6.51e-01 | 100.0% | 84.1% |
| 4946452 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.76 | 73.0 | 6.34e-01 | 100.0% | 83.9% |
| 4989823 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.75 | 72.0 | 6.64e-01 | 100.0% | 88.8% |
| 3738304 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 72.0 | 6.21e-01 | 100.0% | 85.8% |
| 3803189 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.75 | 72.0 | 6.15e-01 | 100.0% | 91.6% |
| 5048036 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.75 | 72.0 | 6.50e-01 | 100.0% | 86.5% |
| 4223940 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.75 | 72.0 | 6.80e-01 | 100.0% | 92.3% |
| None | — | 0.75 | 72.0 | 6.33e-01 | 100.0% | 91.4% | |
| 4158084 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.75 | 72.0 | 6.88e-01 | 100.0% | 96.0% |
| 5050491 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 72.0 | 6.36e-01 | 100.0% | 85.9% |
| 3626978 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.43e-01 | 100.0% | 90.4% |
| 3350882 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.24e-01 | 100.0% | 90.4% |
| 5001115 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.43e-01 | 100.0% | 96.5% |
| 4157830 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.26e-01 | 100.0% | 91.4% |
| 3410686 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.40e-01 | 100.0% | 97.3% |
| 5073166 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.66e-01 | 100.0% | 94.4% |
| None | — | 0.74 | 71.0 | 6.44e-01 | 100.0% | 90.6% | |
| 3457573 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.18e-01 | 100.0% | 88.0% |
| 4926889 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 71.0 | 6.93e-01 | 100.0% | 95.3% |
| None | — | 0.74 | 71.0 | 6.24e-01 | 100.0% | 91.3% | |
| 5076963 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.73 | 71.0 | 6.53e-01 | 100.0% | 87.3% |
| 5076447 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.73 | 71.0 | 6.32e-01 | 100.0% | 84.9% |
| 5045344 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.73 | 70.0 | 6.71e-01 | 100.0% | 94.7% |
| 3596382 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.73 | 70.0 | 5.97e-01 | 100.0% | 87.6% |
| 5073609 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.73 | 70.0 | 6.67e-01 | 100.0% | 96.9% |
| 5075266 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.73 | 70.0 | 6.62e-01 | 100.0% | 92.6% |
| 5065571 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 69.0 | 6.09e-01 | 100.0% | 82.1% |
| 3471628 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 67.0 | 6.08e-01 | 96.5% | 98.5% |
| 3635232 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 69.0 | 5.93e-01 | 100.0% | 93.6% |
| 5023029 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 69.0 | 6.35e-01 | 100.0% | 88.4% |
| 4979473 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 69.0 | 6.66e-01 | 100.0% | 97.7% |
| 3356924 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 68.0 | 5.79e-01 | 100.0% | 88.7% |
| 4956585 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 69.0 | 6.46e-01 | 100.0% | 91.2% |
| 3583703 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.72 | 68.0 | 5.97e-01 | 100.0% | 95.1% |
| 3632584 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.71 | 68.0 | 6.17e-01 | 100.0% | 90.4% |
| 5052708 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.71 | 68.0 | 6.45e-01 | 99.5% | 96.9% |
| 3940178 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.70 | 67.0 | 5.78e-01 | 100.0% | 84.7% |
| 3230061 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.70 | 67.0 | 5.85e-01 | 100.0% | 94.4% |
| 4486719 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 42.0 | 5.30e-01 | 96.0% | 97.6% |
| 3274280 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.69 | 66.0 | 5.85e-01 | 100.0% | 82.9% |
| 3199942 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 64.0 | 5.64e-01 | 97.0% | 95.7% |
| 4585462 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.69 | 66.0 | 5.70e-01 | 100.0% | 80.0% |
| 4027667 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 65.0 | 5.46e-01 | 100.0% | 95.7% |
| 4410716 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 66.0 | 6.11e-01 | 100.0% | 85.7% |
| 3649232 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.69 | 65.0 | 5.54e-01 | 100.0% | 80.0% |
| 3297023 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.68 | 65.0 | 5.80e-01 | 100.0% | 90.8% |
| 3807885 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.68 | 65.0 | 4.93e-01 | 100.0% | 57.0% |
| 2988376 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.67 | 64.0 | 6.01e-01 | 100.0% | 94.6% |
| 3643697 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.67 | 48.0 | 5.25e-01 | 73.6% | 90.6% |
| 4548850 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 63.0 | 4.82e-01 | 100.0% | 54.7% |
| 3470185 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 61.0 | 5.65e-01 | 97.0% | 95.1% |
| 3253922 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 62.0 | 5.59e-01 | 98.5% | 93.1% |
| 4997207 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.66 | 63.0 | 5.83e-01 | 100.0% | 92.7% |
| 5003678 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.64 | 61.0 | 5.56e-01 | 100.0% | 94.2% |
| 5005192 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.64 | 61.0 | 5.61e-01 | 100.0% | 90.8% |
| 5031272 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.64 | 60.0 | 5.61e-01 | 100.0% | 92.2% |
| 5034752 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.54 | 36.0 | 3.78e-01 | 99.5% | 70.7% |
| 3361094 | 284.2.1.1 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 | 0.54 | 49.0 | 3.97e-01 | 96.5% | 95.0% |
| 3294465 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.51 | 46.0 | 4.02e-01 | 97.0% | 94.9% |
D2
medium
residues 71-177
Domain cluster:
representative
D3
medium
residues 343-421
Domain cluster:
rep: KX925554.1__APC46342.1__X__00080__D281-342
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jrjA02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.87 | 61.0 | 6.96e-01 | 73.4% | 100.0% |
| 1xp8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.86 | 62.0 | 6.94e-01 | 74.7% | 100.0% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.82 | 60.0 | 6.14e-01 | 75.9% | 88.0% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 41.0 | 3.24e-01 | 78.5% | 32.9% |
| 1f7uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 47.0 | 3.16e-01 | 86.1% | 59.1% |
| 3hi7B02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 3.77e-01 | 79.7% | 80.5% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 46.0 | 3.12e-01 | 87.3% | 61.8% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 46.0 | 3.35e-01 | 89.9% | 93.7% |
| 2lg1A01 | 1.10.287.2510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 33.0 | 3.48e-01 | 77.2% | 62.9% |
| 2wyoC01 | 3.30.1490.250 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.56 | 41.0 | 3.75e-01 | 77.2% | 69.2% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.55 | 40.0 | 3.44e-01 | 77.2% | 92.9% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.51 | 39.0 | 3.28e-01 | 83.5% | 50.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3421663 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.93 | 70.0 | 7.46e-01 | 78.5% | 88.6% |
| 3350669 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.92 | 69.0 | 7.35e-01 | 78.5% | 88.6% |
| 4345267 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.90 | 68.0 | 6.86e-01 | 79.7% | 80.0% |
| 4250277 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.89 | 68.0 | 7.22e-01 | 79.7% | 91.4% |
| 4508262 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.89 | 64.0 | 7.25e-01 | 74.7% | 100.0% |
| 4568160 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.89 | 65.0 | 7.10e-01 | 75.9% | 95.3% |
| 4524142 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.88 | 66.0 | 6.44e-01 | 78.5% | 74.1% |
| 4163672 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.87 | 68.0 | 7.26e-01 | 100.0% | 92.9% |
| 4504505 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.86 | 63.0 | 7.08e-01 | 93.7% | 100.0% |
| 4100290 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.86 | 62.0 | 6.25e-01 | 75.9% | 76.2% |
| 3962196 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.85 | 61.0 | 6.44e-01 | 74.7% | 85.7% |
| 3644530 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.85 | 62.0 | 6.93e-01 | 94.9% | 100.0% |
| 4098746 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.84 | 61.0 | 6.14e-01 | 75.9% | 76.2% |
| 4650117 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.84 | 61.0 | 6.11e-01 | 75.9% | 82.5% |
| 3454856 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.84 | 61.0 | 6.29e-01 | 75.9% | 81.3% |
| 4144386 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.82 | 60.0 | 6.31e-01 | 77.2% | 85.7% |
| 4214233 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.82 | 61.0 | 6.07e-01 | 78.5% | 74.7% |
| 4680941 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.82 | 61.0 | 6.23e-01 | 78.5% | 80.8% |
| 3354127 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.81 | 58.0 | 6.51e-01 | 98.7% | 100.0% |
| 4339052 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.81 | 62.0 | 6.19e-01 | 98.7% | 80.0% |
| 4452602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 68.0 | 4.39e-01 | 100.0% | 73.9% |
| 4485228 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 67.0 | 4.30e-01 | 100.0% | 71.5% |
| 3730592 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.64 | 51.0 | 3.42e-01 | 87.3% | 76.4% |
| 4325434 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.62 | 49.0 | 2.97e-01 | 86.1% | 41.2% |
| None | — | 0.62 | 48.0 | 3.06e-01 | 87.3% | 44.9% | |
| None | — | 0.61 | 48.0 | 3.04e-01 | 87.3% | 45.3% | |
| None | — | 0.61 | 48.0 | 2.90e-01 | 86.1% | 36.1% | |
| 4303833 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.61 | 48.0 | 3.35e-01 | 87.3% | 70.9% |
| None | — | 0.61 | 47.0 | 2.87e-01 | 86.1% | 37.8% | |
| None | — | 0.61 | 48.0 | 2.95e-01 | 88.6% | 35.9% | |
| 4593208 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.61 | 48.0 | 3.25e-01 | 87.3% | 70.6% |
| 4112234 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 48.0 | 3.14e-01 | 88.6% | 53.1% |
| 4020807 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 48.0 | 3.31e-01 | 88.6% | 73.3% |
| None | — | 0.60 | 47.0 | 2.86e-01 | 86.1% | 34.5% | |
| 2120488 | 7581.1.1.2 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt | 0.60 | 47.0 | 3.00e-01 | 83.5% | 35.7% |
| None | — | 0.60 | 48.0 | 2.98e-01 | 88.6% | 45.7% | |
| 4389484 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.59 | 47.0 | 3.24e-01 | 86.1% | 70.2% |
| None | — | 0.59 | 46.0 | 2.92e-01 | 84.8% | 44.9% | |
| 4682878 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 46.0 | 2.83e-01 | 87.3% | 36.8% |
| 4179417 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.59 | 45.0 | 3.17e-01 | 86.1% | 76.6% |
| 4156893 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.58 | 45.0 | 3.14e-01 | 87.3% | 72.5% |
| None | — | 0.58 | 45.0 | 2.78e-01 | 86.1% | 34.6% | |
| 4421947 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.58 | 45.0 | 2.73e-01 | 87.3% | 36.5% |
| None | — | 0.56 | 41.0 | 2.46e-01 | 78.5% | 13.5% | |
| 4312902 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.56 | 40.0 | 2.46e-01 | 78.5% | 13.5% |
| None | — | 0.55 | 40.0 | 2.44e-01 | 78.5% | 13.5% | |
| 3623330 | 386.1.1.24 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 | 0.54 | 39.0 | 4.35e-01 | 81.0% | 100.0% |
| 3518360 | 2004.1.1.560 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_4, AAA_34 | 0.53 | 45.0 | 2.67e-01 | 97.5% | 24.3% |
| 2505916 | 101.1.1.39 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ | 0.53 | 40.0 | 3.23e-01 | 81.0% | 92.9% |
| 3610958 | 1189.1.1.2 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B | 0.51 | 44.0 | 2.85e-01 | 94.9% | 92.5% |