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gwf2_scaffold_96_prodigal-single.1__X__X__00260
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00260
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-82
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1idjA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.53 | 37.0 | 2.43e-01 | 74.6% | 83.8% |
| 3k59A07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.52 | 43.0 | 3.59e-01 | 100.0% | 78.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4341232 | 220.1.1.127 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 | 0.57 | 37.0 | 2.89e-01 | 100.0% | 29.1% |
| 4011724 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.55 | 38.0 | 2.89e-01 | 94.4% | 27.4% |
| 3593475 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 45.0 | 3.12e-01 | 100.0% | 67.7% |
| 4030492 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.53 | 39.0 | 2.89e-01 | 83.1% | 39.1% |
| 3606765 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 34.0 | 2.61e-01 | 100.0% | 25.3% |
| 3182759 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 37.0 | 2.85e-01 | 78.9% | 63.6% |
| 4091103 | 2004.1.1.258 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 | 0.51 | 37.0 | 2.55e-01 | 81.7% | 76.9% |
| 3733710 | 10.12.1.107 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 | 0.51 | 41.0 | 2.93e-01 | 95.8% | 58.9% |
D2
medium
residues 106-188
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.74 | 35.0 | 4.78e-01 | 89.2% | 97.3% |
| 5trbA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 38.0 | 4.17e-01 | 90.4% | 66.7% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.67 | 27.0 | 3.21e-01 | 88.0% | 50.9% |
| 2bayE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 36.0 | 4.18e-01 | 90.4% | 76.3% |
| 4aybP00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.65 | 32.0 | 4.10e-01 | 92.8% | 86.4% |
| 4r7eA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 35.0 | 3.85e-01 | 90.4% | 65.2% |
| 2yhoE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 37.0 | 3.97e-01 | 95.2% | 67.1% |
| 2vl6A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 36.0 | 4.53e-01 | 90.4% | 97.9% |
| 3lrqB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 40.0 | 4.13e-01 | 95.2% | 68.8% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.57 | 32.0 | 4.05e-01 | 89.2% | 97.9% |
| 4wz0A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 38.0 | 3.46e-01 | 96.4% | 52.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4322207 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 33.0 | 4.61e-01 | 86.7% | 100.0% |
| 3620613 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 38.0 | 4.75e-01 | 91.6% | 93.3% |
| 3400742 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.70 | 37.0 | 3.93e-01 | 88.0% | 57.3% |
| 4024651 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 35.0 | 4.13e-01 | 85.5% | 70.0% |
| 5052150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 39.0 | 4.70e-01 | 91.6% | 85.5% |
| 3902028 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.66 | 37.0 | 4.27e-01 | 91.6% | 77.6% |
| 4997635 | 376.1.1.182 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zn_ribbon_3 | 0.64 | 31.0 | 3.22e-01 | 86.7% | 48.8% |
| 4929321 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 33.0 | 3.74e-01 | 94.0% | 66.7% |
| 3324521 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.62 | 36.0 | 3.96e-01 | 92.8% | 72.3% |
| 3494512 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.62 | 40.0 | 4.19e-01 | 96.4% | 73.3% |
| 3250827 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.61 | 36.0 | 3.84e-01 | 92.8% | 65.3% |
| 3519896 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 35.0 | 4.40e-01 | 86.7% | 98.0% |
| 3580292 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 36.0 | 4.31e-01 | 91.6% | 94.5% |
| 3430514 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.58 | 39.0 | 3.88e-01 | 96.4% | 67.1% |
| 5032007 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.58 | 32.0 | 2.96e-01 | 100.0% | 42.9% |
| 3407067 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 36.0 | 4.14e-01 | 92.8% | 85.7% |
| 3226311 | 376.1.1.29 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 | 0.57 | 38.0 | 4.03e-01 | 98.8% | 78.1% |
| 5055053 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 31.0 | 3.65e-01 | 100.0% | 76.7% |
| 4941232 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.56 | 32.0 | 2.85e-01 | 100.0% | 40.9% |
| 4992429 | 375.12.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related | 0.56 | 31.0 | 2.99e-01 | 100.0% | 43.0% |
| 5074538 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.52 | 32.0 | 3.65e-01 | 90.4% | 85.0% |
| 3902544 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.50 | 40.0 | 3.69e-01 | 100.0% | 65.5% |
D3
medium
residues 268-311
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mdmA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 47.0 | 2.66e-01 | 81.8% | 8.0% |
| 4xcvA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 48.0 | 3.25e-01 | 100.0% | 82.9% |
| 2p9bA04 | 1.20.58.520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Amidohydrolase | 0.57 | 46.0 | 3.65e-01 | 90.9% | 53.3% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.54 | 43.0 | 2.70e-01 | 84.1% | 46.7% |
| 2eklA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 2.86e-01 | 95.5% | 92.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225673 | 5001.1.1.65 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Serpentine_r_xa | 0.63 | 48.0 | 2.90e-01 | 84.1% | 38.1% |
| 3742209 | 6140.1.1.0 ↗ | alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin | 0.60 | 52.0 | 3.30e-01 | 100.0% | 85.1% |
| 3697852 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 46.0 | 2.92e-01 | 86.4% | 40.0% |
| 3575022 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.51 | 40.0 | 3.18e-01 | 90.9% | 98.0% |
| 3507546 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 2.48e-01 | 97.7% | 25.3% |